Basic Information
Locus ID:
Ag8G02209
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Spotted leaf protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 265493980 | 265496363 | + | Ag8G02209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 76,071.90 Da | 38.44 | 110.39 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 283 | 325 | 2.78506E-24 | - |
| Pfam | PF04564 | U-box domain | 281 | 347 | 1.6E-14 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 414 | 450 | 4.9E-5 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 392 | 662 | 3.73E-35 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 352 | 3.24E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 352 | 1.5E-23 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 357 | 674 | 8.6E-34 | IPR011989 |
| SMART | SM00185 | arm_5 | 578 | 619 | 88.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 410 | 451 | 0.021 | IPR000225 |
| SMART | SM00185 | arm_5 | 536 | 577 | 1.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 452 | 493 | 3.8 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 282 | 345 | 9.6E-25 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 547 | 590 | 8.9774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 422 | 464 | 10.5524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 278 | 352 | 28.599915 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60190.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_017220718.1 | PREDICTED: U-box domain-containing protein 19 [Daucus carota subsp. sativus] | 0 |
| O80742 | U-box domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=PUB19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YQN5 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026544 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.257038 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.076647 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.192038 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.264487 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.327798 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.142915 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.134868 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.073614 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.503387 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.679206 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.844428 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.661412 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.083308 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.083006 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 40.404217 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 28.945564 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.287846 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.536201 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.077873 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.482214 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 31.172081 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.621964 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.800074 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.702516 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.254708 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.719912 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.540048 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.641073 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.261126 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.663224 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.408948 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.022772 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.882427 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.398406 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.406577 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.789423 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.454942 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.016133 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.040542 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.690922 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.544032 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.641263 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.906691 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.671604 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.454884 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.493442 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.908878 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.725624 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.299443 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.538 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25842, jg5483 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13673, gene_3646 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000646 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g116810, BVRB_6g149020 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30506, Sbi_jg42945, Sbi_jg45553, Sbi_jg58740 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11400, Seu_jg28612 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002398, GOSA_00014965 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35368, Sgl40724, Sgl55251, Sgl60511 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004340, gene:ENSEOMG00000012771 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0022770, CQ.Regalona.r1.5BG0024160 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30138990, pistato.v30141280, pistato.v30141350 ... |
| Apiaceae | Apium graveolens | 1 | Ag8G02209 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G009080, COCNU_11G009020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710056 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1567.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G33857, Ftri2G12729, Ftri8G04547 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10560.1, AT1G60190.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023320m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g09210.v2.2, Sp2g04480.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g029170.2N, BniB07g046170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2086 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11904 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1047, evm.TU.LG10.780 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022095, Pov_00022410 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26282 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1772, AH08.1489, BH03.1925, CH08.1649 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0534000, gene-QOZ80_6BG0487040 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0198490.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004918, gene-QYE76_031997 |
| Poaceae | Oryza coarctata | 4 | Oco15G008210, Oco16G007900, Oco17G003880, Oco18G003840 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g32060.1, LOC_Os09g21120.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G170200, gene-BS78_07G133100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702363, Pt_Chr0702447 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr10G010960, Chr11G011470, Chr13G022010, Chr20G006300 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G802500, Tel5E01G333500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG067190, gene_TRIDC2AG078570 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G475600.1.cds1, TraesCS2B02G499300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb178990_P001, Zm00001eb311590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19948, nbis-gene-45076 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22984, Zma_g32473 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2499, evm.TU.LG02.916, evm.TU.LG03.1904 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g15410 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1004 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14686, nbisL1-mrna-23082 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8419 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12569 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000010l.37 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009054 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17051, nbisL1-mrna-21195 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17774, nbisL1-mrna-8640 |
| Salicaceae | Populus euphratica | 2 | populus_peu28618, populus_peu30076 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632770, gene-LOC132641363 |
| Solanaceae | Solanum chilense | 1 | SOLCI003617900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012998, gene-LOC107018908 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.15534_chr06_-, gene_2911 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0936 |