Basic Information
Locus ID:
Ag8G02194
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UPL7
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 265279876 | 265284482 | - | Ag8G02194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.19 | 18,261.42 Da | 51.68 | 65.81 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 108 | 160 | 3.7E-9 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 102 | 160 | 4.58E-10 | IPR035983 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 75 | 159 | 3.1E-16 | - |
| ProSiteProfiles | PS50237 | HECT domain profile. | 112 | 160 | 9.058124 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53090.1 | ubiquitin-protein ligase 7. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_035544452.1 | E3 ubiquitin-protein ligase UPL7 isoform X2 [Juglans regia] | 0 |
| Q9SCQ2 | E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana OX=3702 GN=UPL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J4ZFX9 | HECT-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_016858 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.617007 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.153839 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.103847 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.211934 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.244436 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.450479 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.507519 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.069251 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.784473 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.679594 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.453574 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.378262 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.903822 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.202053 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.92253 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.442742 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.436462 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.416223 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.793888 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.495269 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.093107 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.741461 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.049019 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 66.612671 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 66.324455 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28134 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11187, gene_2729 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019978 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38182, Sbi_jg6307 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15544 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003639 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01593, Sgl06761 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011886, gene:ENSEOMG00000029493 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0012830, CQ.Regalona.r1.3BG0012900 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232670 |
| Apiaceae | Apium graveolens | 2 | Ag8G02194, Ag9G01928 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000690 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715777, gene-LOC120103986 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3210.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G00075, Ftri2G18609 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G17205.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019984m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g15400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g047530.2N, BniB07g052790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1391 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1482 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0371s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g17740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1146 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026306 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G20938, Lb3G20939, Lb3G20940, Lb3G20941 |
| Poaceae | Echinochloa crus-galli | 2 | BH05.1113, CH05.1260 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0403890, gene-QOZ80_5BG0452280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0024690.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009914 |
| Poaceae | Oryza coarctata | 2 | Oco09G002840, Oco10G002910 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G059800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501815, Pt_Chr0501877 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G011920, Chr18G000490, Chr22G014630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G198200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015460, gene_TRIDC1BG018750 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G106100.3, TraesCS1B02G123400.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb282520_P003, Zm00001eb412620_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23477 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26474 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1617, evm.TU.LG11.972 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g13290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.686 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1285 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18462 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6369 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.804 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012572 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5268 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13119 |
| Salicaceae | Populus euphratica | 2 | populus_peu06853, populus_peu20763 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626692 |
| Solanaceae | Solanum chilense | 1 | SOLCI002837100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007824 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8539 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18230.v3.1 |