halophFGD

Basic Information

Locus ID: Ag8G02184

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Domain of unknown function (DUF569)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	265200650	265206220	-	Ag8G02184

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.85	55,675.37 Da	46.85	72.62	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04601	Domain of unknown function (DUF569)	207	350	8.8E-72	IPR007679
Pfam	PF04601	Domain of unknown function (DUF569)	1	143	1.2E-55	IPR007679
SUPERFAMILY	SSF50405	Actin-crosslinking proteins	211	355	9.81E-27	IPR008999
SUPERFAMILY	SSF50405	Actin-crosslinking proteins	3	146	7.46E-21	IPR008999
Gene3D	G3DSA:2.80.10.50	-	5	146	7.6E-14	-
Gene3D	G3DSA:2.80.10.50	-	209	353	5.4E-19	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G27100.1	Actin cross-linking protein.
RefSeq	XP_017222562.1	PREDICTED: uncharacterized protein LOC108199306 [Daucus carota subsp. sativus]
TrEMBL	A0A175YR88	GST N-terminal domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026585 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.668327	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	23.477573	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.789404	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	22.444492	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	22.435211	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	18.974897	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	18.37184	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	13.916308	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	10.604341	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.317943	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.670937	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.600357	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	6.127793	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.653492	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	35.194599	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	35.549931	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.526209	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	36.925568	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	38.476673	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	61.828857	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	37.369942	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.944159	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.917696	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.435088	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	17.439112	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.421389	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	12.301437	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.137766	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.314624	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.072008		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.671859		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.075202		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.493529		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	9.667791		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	18.238552		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	8.533228		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.603846		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.980525		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.909404	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.756576	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.687989	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	260.746582	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	257.606262	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	18.906759	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.904634	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	239.320435	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.864082	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.284473	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.49207	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.731323	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg19805, jg30507, jg30899, jg34718, jg5447, jg7083, jg9389
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18198, gene_24537
Amaranthaceae	Atriplex hortensis	2	Ah032594, Ah032595
Amaranthaceae	Beta vulgaris	3	BVRB_2g040550, BVRB_2g040560, BVRB_6g154880
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg29863, Sbi_jg43103, Sbi_jg43327, Sbi_jg45696
Amaranthaceae	Salicornia europaea	2	Seu_jg11541, Seu_jg18562
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001943, GOSA_00004314
Amaranthaceae	Suaeda glauca	5	Sgl35893, Sgl35908, Sgl41216, Sgl66363, Sgl70698
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000000949, gene:ENSEOMG00000001168 ... gene:ENSEOMG00000013328, gene:ENSEOMG00000015670, gene:ENSEOMG00000021774, gene:ENSEOMG00000028659, gene:ENSEOMG00000047877, gene:ENSEOMG00000048983
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0005380, CQ.Regalona.r1.2BG0007690 ... CQ.Regalona.r1.6AG0007190, CQ.Regalona.r1.6BG0007800
Anacardiaceae	Pistacia vera	2	pistato.v30223370, pistato.v30224400
Apiaceae	Apium graveolens	7	Ag1G01357, Ag1G01366, Ag3G01079, Ag3G02632, Ag5G00052 ... Ag7G02058, Ag8G02184
Arecaceae	Cocos nucifera	2	COCNU_14G013010, contig69332191G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103712053, gene-LOC103721967, gene-LOC103721972
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.3737.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G26871, Ftri13G28886, Ftri18G09122, Ftri7G18702 ... Ftri9G29041
Brassicaceae	Arabidopsis thaliana	6	AT1G27100.1, AT1G59710.1, AT1G69890.1, AT1G69900.1 ... AT3G01311.1, AT3G28630.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10007368m.g.v1.0, Thhalv10019850m.g.v1.0 ... Thhalv10022210m.g.v1.0, Thhalv10023614m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g21680.v2.2, Sp2g04840.v2.2, Sp2g17300.v2.2 ... Sp3g00770.v2.2, Sp5g25000.v2.2, Sp5g25010.v2.2
Brassicaceae	Brassica nigra	11	BniB01g060640.2N, BniB03g019040.2N, BniB03g031310.2N ... BniB03g041060.2N, BniB03g047620.2N, BniB04g019730.2N, BniB04g039660.2N, BniB05g034100.2N, BniB05g034120.2N, BniB05g066920.2N, BniB07g036320.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G0016
Casuarinaceae	Casuarina glauca	1	Cgl07G0006
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g17450, gene.Cymno10g06200, gene.Cymno14g09720
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g37020, gene.Thate08g14880
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2233
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.138, evm.TU.LG03.174
Plantaginaceae	Plantago ovata	4	Pov_00014148, Pov_00023448, Pov_00027003, Pov_00035708
Plumbaginaceae	Limonium bicolor	8	Lb1G01143, Lb1G02221, Lb1G02237, Lb2G12853, Lb2G13010 ... Lb2G13025, Lb3G18883, Lb4G23347
Poaceae	Echinochloa crus-galli	6	AH01.247, AH03.493, BH01.482, BH03.591, CH01.350, CH03.670
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3AG0212080, gene-QOZ80_7AG0559220 ... gene-QOZ80_7BG0590460
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0229610.1, HORVU.MOREX.r3.5HG0520830.2
Poaceae	Lolium multiflorum	2	gene-QYE76_042931, gene-QYE76_061047
Poaceae	Oryza coarctata	4	Oco05G026300, Oco06G027230, Oco13G003080, Oco14G003370
Poaceae	Oryza sativa	2	LOC_Os03g58740.1, LOC_Os07g09384.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G047000, gene-BS78_02G065700
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0105520, Pt_Chr0303768
Poaceae	Sporobolus alterniflorus	5	Chr01G002510, Chr12G034350, Chr19G016720, Chr24G000010 ... Chr28G002400
Poaceae	Thinopyrum elongatum	3	Tel2E01G169600, Tel3E01G123600, Tel5E01G708600
Poaceae	Triticum dicoccoides	3	gene_TRIDC3AG007870, gene_TRIDC3BG010740 ... gene_TRIDC5AG064370
Poaceae	Triticum aestivum	6	TraesCS3A02G066800.1, TraesCS3B02G079600.1 ... TraesCS3D02G066500.1, TraesCS5A02G448900.1, TraesCS5B02G453600.1, TraesCS5D02G455400.1
Poaceae	Zea mays	8	Zm00001eb034470_P001, Zm00001eb061210_P001 ... Zm00001eb100370_P001, Zm00001eb212710_P001, Zm00001eb241350_P001, Zm00001eb241360_P001, Zm00001eb302460_P001, Zm00001eb371650_P001
Poaceae	Zoysia japonica	4	nbis-gene-15382, nbis-gene-16495, nbis-gene-35614 ... nbis-gene-55116
Poaceae	Zoysia macrostachya	3	Zma_g2564, Zma_g262, Zma_g4850
Portulacaceae	Portulaca oleracea	6	evm.TU.LG03.311, evm.TU.LG12.1393, evm.TU.LG13.308 ... evm.TU.LG13.590, evm.TU.LG21.12, evm.TU.LG21.283
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g05430, gene.Posoc02g17790, gene.Posoc06g17360
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_17_RagTag.314, evm.TU.Scaffold_3_RagTag.1821
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-2271, nbisL1-mrna-23014, nbisL1-mrna-2681
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16725, nbisL1-mrna-3180
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14840, nbisL1-mrna-3001
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000013l.215, evm.TU.utg000019l.122
Rhizophoraceae	Kandelia obovata	1	Maker00006606
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12099, nbisL1-mrna-7125
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15793, nbisL1-mrna-18330
Salicaceae	Populus euphratica	5	populus_peu07783, populus_peu09116, populus_peu14462 ... populus_peu21853, populus_peu24450
Solanaceae	Lycium barbarum	7	gene-LOC132599733, gene-LOC132619920, gene-LOC132621979 ... gene-LOC132623434, gene-LOC132626131, gene-LOC132641490, gene-LOC132641495
Solanaceae	Solanum chilense	5	SOLCI000401500, SOLCI000401600, SOLCI002658200 ... SOLCI004994000, SOLCI006414100
Solanaceae	Solanum pennellii	5	gene-LOC107003886, gene-LOC107007957, gene-LOC107008706 ... gene-LOC107009549, gene-LOC107019186
Tamaricaceae	Reaumuria soongarica	5	STRG.9696_chr06_+, gene_14178, gene_14491, gene_17387 ... gene_2145
Tamaricaceae	Tamarix chinensis	3	TC01G3249, TC03G0574, TC12G0115
Zosteraceae	Zostera marina	2	Zosma01g27030.v3.1, Zosma04g24950.v3.1