Basic Information
Locus ID:
Ag8G02150
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 264421961 | 264427271 | + | Ag8G02150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 47,361.15 Da | 43.18 | 103.53 | -0.30 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23910.1 | 0 | |
| RefSeq | XP_017221990.1 | PREDICTED: uncharacterized protein LOC108198726 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YS25 | Protein phosphatase CheZ OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.68398 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.627327 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.218789 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.844422 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.25239 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.757175 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.904693 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.260243 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.669269 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.49834 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.110218 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.077331 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.276421 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.153504 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.576031 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.004661 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.862654 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.783473 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.528675 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.788238 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.082765 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.470984 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.992378 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.155949 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.309233 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.036543 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.133056 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.688199 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.1629 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.165096 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.448794 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.929019 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.825147 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.913465 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.726408 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.233434 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.726228 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.958829 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.470383 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.352835 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.102365 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.978509 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.180775 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.86945 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.993994 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.991686 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.281973 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.085661 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.50812 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.611145 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27581 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4810 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022522 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g065670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59523, Sbi_jg63130 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23773 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026139 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl02878, Sgl07995, Sgl64580 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015303, gene:ENSEOMG00000030229 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0026310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30241650 |
| Apiaceae | Apium graveolens | 2 | Ag8G02149, Ag8G02150 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G004530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706522 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1053.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G14885 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G23910.1, AT3G24255.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002763m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g037630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0706 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0751 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g09600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g18630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.120 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022875 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18848, Lb3G18866 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.760, BH09.773, CH09.818 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0320940, gene-QOZ80_4BG0352310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0161390.2 |
| Poaceae | Oryza coarctata | 2 | Oco07G003710, Oco08G003930 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g31050.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G062500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303066 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G015180, Chr25G012870, Chr26G004660, Chr30G012610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G502800 |
| Poaceae | Zea mays | 1 | Zm00001eb085830_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44943 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19538 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1516, evm.TU.LG21.1185 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g08430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1010 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11443 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-864 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.637 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007336 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13670 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3569 |
| Salicaceae | Populus euphratica | 1 | populus_peu01354 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610324 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031448 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20526_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2135 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02770.v3.1 |