Basic Information
Locus ID:
Ag8G02052
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 261836347 | 261842304 | - | Ag8G02052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 113,224.58 Da | 52.40 | 63.98 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14135 | STKc_PRP4 | 659 | 975 | 0.0 | IPR044092 |
| Pfam | PF00069 | Protein kinase domain | 661 | 975 | 3.2E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 647 | 977 | 3.64E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 720 | 976 | 2.1E-72 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 719 | 7.1E-32 | - |
| SMART | SM00220 | serkin_6 | 660 | 975 | 5.0E-73 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 660 | 975 | 37.601398 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 787 | 799 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 286 | - | - |
| Coils | Coil | Coil | 380 | 400 | - | - |
| Coils | Coil | Coil | 501 | 524 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25840.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017222466.1 | PREDICTED: serine/threonine-protein kinase prpf4B isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q07538 | Serine/threonine-protein kinase prp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YRR4 | non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026727 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.555377 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.955169 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.715132 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.738511 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.58083 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.286321 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.436576 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.358333 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.433802 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.406546 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.531743 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.979275 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.771124 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.210439 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.02511 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.197644 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.33656 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.999915 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.773538 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.242599 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.065903 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.951665 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.977163 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.883364 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.225684 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.414892 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.656549 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.90262 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.271323 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.301923 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.808016 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.535529 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.410631 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.861673 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.471557 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.046616 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.926692 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.951063 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.040953 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.776071 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.126585 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.107428 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.018443 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.03204 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.022243 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.251183 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.335408 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.649025 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.904036 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.584351 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34921, jg9170 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24403, gene_3994 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025858 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13811, Sbi_jg52114 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9732 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018876 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34165, Sgl39796 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000812, gene:ENSEOMG00000000895 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0014830, CQ.Regalona.r1.6BG0015640 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30223410, pistato.v30225530 |
| Apiaceae | Apium graveolens | 2 | Ag6G00495, Ag8G02052 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005120, COCNU_03G010120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695498, gene-LOC103700973 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1520.V1.1, AsparagusV1_08.2886.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G06048 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G13350.2, AT3G25840.1, AT3G53640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003622m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g15070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g066460.2N, BniB04g013650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2056 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2194 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g01930, gene.Cymno17g04920 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0999s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g18470 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.530 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027452, Pov_00039566 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01554 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.4248, AH08.1004, BH05.4346, CH05.4576, CH08.1328 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0219280, gene-QOZ80_3BG0264540 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0337020.1, HORVU.MOREX.r3.5HG0419470.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_000295, gene-QYE76_062451, gene-QYE76_062456 ... |
| Poaceae | Oryza coarctata | 3 | Oco05G021510, Oco23G011480, Oco24G011300 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g44330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G172700 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G020200, Chr06G021180, Chr19G006870, Chr20G007800 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G081100, Tel5E01G000800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4BG007020, gene_TRIDC5AG000690 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G269100.1, TraesCS4B02G044900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb033230_P002, Zm00001eb133880_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26220 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.653, evm.TU.LG21.340 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g04300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.923 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23649 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5972 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21938 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.516 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004345 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10908 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23137 |
| Salicaceae | Populus euphratica | 3 | populus_peu07050, populus_peu21014, populus_peu30998 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606093, gene-LOC132607627, gene-LOC132641794 |
| Solanaceae | Solanum chilense | 1 | SOLCI003188400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020321, gene-LOC107021947 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10230 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2150, TC04G0215 |
| Zosteraceae | Zostera marina | 1 | Zosma05g19200.v3.1 |