Basic Information
Locus ID:
Ag8G02046
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
mediator of RNA polymerase II transcription subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 261600416 | 261612818 | + | Ag8G02046 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 94,814.97 Da | 60.75 | 77.13 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11265 | Mediator complex subunit 25 von Willebrand factor type A | 6 | 231 | 8.5E-47 | IPR021419 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 881 | - | - |
| Coils | Coil | Coil | 779 | 809 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25540.1 | phytochrome and flowering time regulatory protein (PFT1). Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense. | 0 |
| RefSeq | XP_017222978.1 | PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X1 [Daucus carota subsp. sativus] | 0 |
| A0A3Q7JC00 | Mediator of RNA polymerase II transcription subunit 25 OS=Solanum lycopersicum OX=4081 GN=MED25 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YRV5 | Mediator of RNA polymerase II transcription subunit 25 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.47315 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.682896 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.268295 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.521336 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.101339 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.218136 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.17006 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.375381 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.870432 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.593889 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.878504 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.123287 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.021568 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.063097 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.605283 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.32264 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.064183 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.0375 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.970936 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.637827 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.334202 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.503598 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.457268 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.698538 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.852383 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.214239 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.325713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.48706 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.954021 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.167686 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.609948 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.765649 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.301271 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.213067 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.522377 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.193317 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.620658 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.297878 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.16957 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.833004 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.97578 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.533249 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.599957 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.004644 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.217924 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.651171 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.277828 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.984125 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.453806 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.614128 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5291 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15853 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019367 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g057020 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg15234, Sbi_jg22743, Sbi_jg41105, Sbi_jg56045 ... |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26528 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006312, GOSA_00018897 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01732, Sgl06886, Sgl34142, Sgl34375, Sgl39778 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013339, gene:ENSEOMG00000032646 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009770, CQ.Regalona.r1.3BG0009930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225680 |
| Apiaceae | Apium graveolens | 1 | Ag8G02046 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008260 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708191 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1030.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA30850 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G25540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006778m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g22670.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g018400.2N, BniB04g040660.2N, BniB04g040670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2043 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2182 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g07770 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g21030, gene.Thate07g21040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.512 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027409 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01480 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1495, BH03.1674, CH03.1814 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_6AG0531550, gene-QOZ80_6AG0531580 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004414, gene-QYE76_004449 |
| Poaceae | Oryza coarctata | 2 | Oco17G002240, Oco18G002160 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g13610.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G145500, gene-BS78_05G204500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702682 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G012270, Chr10G012280, Chr11G009890, Chr14G012100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G304400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG029240, gene_TRIDC5BG030780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G179400.2, TraesCS5B02G177300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb097890_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35503 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32354 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1410, evm.TU.LG07.1471 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g22870 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_15_RagTag.109, evm.TU.Scaffold_15_RagTag.110 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2964, nbisL1-mrna-3903 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17441 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000013l.196, evm.TU.utg000001l.63 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004671 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10915, nbisL1-mrna-11659 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23128, nbisL1-mrna-2827 |
| Salicaceae | Populus euphratica | 2 | populus_peu07036, populus_peu20994 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616589, gene-LOC132641817 |
| Solanaceae | Solanum chilense | 1 | SOLCI005537500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007204, gene-LOC107020849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19515_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0234, TC04G0235 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32020.v3.1, Zosma04g19140.v3.1 |