Basic Information
Locus ID:
Ag8G02042
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase STN7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 261364128 | 261369667 | - | Ag8G02042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 68,666.62 Da | 40.03 | 91.61 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14013 | STKc_SNT7_plant | 149 | 494 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 146 | 337 | 1.0E-19 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 126 | 496 | 2.35E-35 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 253 | 355 | 5.3E-23 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 132 | 224 | 9.8E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 356 | 498 | 1.0E-21 | - |
| SMART | SM00220 | serkin_6 | 145 | 494 | 6.9E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 145 | 494 | 24.937336 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 285 | 297 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 151 | 177 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68830.1 | STT7 homolog STN7. STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation | 0 |
| RefSeq | XP_017223588.1 | PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9S713 | Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STN7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YSD8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.476795 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 40.363152 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 28.040516 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 38.74366 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.238979 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 47.770554 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 23.691685 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.125685 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 45.009815 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.224255 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 46.82859 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 47.276482 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 47.689377 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 44.631405 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 33.923592 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.391163 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 39.436588 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 73.163391 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 75.730812 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 84.294952 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 86.310394 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.782722 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.051018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.428444 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.966803 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 79.581169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 59.702667 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 98.927437 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 79.756851 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 55.647682 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 89.887695 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 53.890961 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 104.000816 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 42.571934 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 93.495018 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 101.378418 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 95.644905 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 98.554802 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 115.390892 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 229.069885 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 336.430969 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.772422 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.665981 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 30.928589 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.990467 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.935699 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.409697 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.203792 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.38313 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.911395 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9186 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18381 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025938 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12744, Sbi_jg53153 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8732 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018921 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34126, Sgl34358, Sgl39759 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001590, gene:ENSEOMG00000001784 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0015170, CQ.Regalona.r1.6BG0016010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225740 |
| Apiaceae | Apium graveolens | 1 | Ag8G02042 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008190 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697640 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2786.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G26913 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G68830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018353m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g23940.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g046200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2033 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2172 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g00020 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0857s00002.v1.0, Dusal.0859s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.502 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019334 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G30218, Lb6G30321 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1536, BH05.1683, CH05.1904 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0364440, gene-QOZ80_5BG0412460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0079140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015579 |
| Poaceae | Oryza coarctata | 1 | Oco09G015930 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g47560.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G223000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503742, Pt_Chr0503812 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G015080, Chr12G021790, Chr22G002250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G602100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG054320, gene_TRIDC1BG062180 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G369800.1, TraesCS1B02G388900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb294720_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24963 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28727 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.621, evm.TU.LG21.311 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g00070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.941 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23668 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3101 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21926 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.527 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004481 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10920 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23121 |
| Salicaceae | Populus euphratica | 4 | populus_peu07026, populus_peu20984, populus_peu20985 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645142 |
| Solanaceae | Solanum chilense | 1 | SOLCI007315900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007041 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10238 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0245 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03790.v3.1 |