Basic Information
Locus ID:
Ag8G01990
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Conserved gene of
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 254405848 | 254413132 | + | Ag8G01990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 55,542.33 Da | 49.70 | 89.39 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 337 | 404 | 5.05E-8 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 118 | 286 | 3.57E-7 | - |
| Gene3D | G3DSA:2.60.120.330 | - | 103 | 315 | 6.6E-13 | IPR027443 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 405 | 9.3E-7 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19895.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017220227.1 | PREDICTED: uncharacterized protein LOC108197193 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q6DBN5 | U-box domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=PUB62 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YRZ0 | U-box domain-containing protein 62 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026916 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.163664 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.999389 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.176793 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.004613 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.759823 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.109876 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.913659 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.627661 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.747602 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.68852 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.624662 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.712736 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.396262 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.960146 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.153874 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.645411 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.301649 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.593181 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.966496 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.883119 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.967686 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.414243 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.095949 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.950676 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.431592 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.633186 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.453253 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.379776 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.081869 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.364026 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.814781 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.552248 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.43322 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.602757 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.384602 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.025844 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.46124 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.324406 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.516212 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.834852 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.006197 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.128817 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.233185 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.624686 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.870627 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.248491 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.553628 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.828836 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.455046 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.122351 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg2494, jg34081, jg9695 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17092, gene_20559 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038418 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g042410, BVRB_9g203510 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14394, Sbi_jg30124, Sbi_jg43578, Sbi_jg53556 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10189, Seu_jg18324 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004087, GOSA_00012575 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl26188, Sgl66075, Sgl70390, Sgl78124, Sgl78131 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000013896, gene:ENSEOMG00000018590 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0002890, CQ.Regalona.r1.2BG0004070 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30178060, pistato.v30219850 |
| Apiaceae | Apium graveolens | 2 | Ag2G02652, Ag8G01990 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G004570, COCNU_09G006260, COCNU_12G006240 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103706256, gene-LOC103708904, gene-LOC103717222 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1783.V1.1, AsparagusV1_07.526.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri1G02336, Ftri5G15313, Ftri6G19734, FtriNA26420 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G40640.1, AT3G19895.1, AT5G05230.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10003285m.g.v1.0, Thhalv10013906m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g17900.v2.2, Sp4g22970.v2.2, Sp6g37600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g055390.2N, BniB07g050910.2N, BniB08g026300.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0025, Ceq07G0609 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0027, Cgl07G0602 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g16720, gene.Cymno14g05270 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g00850, gene.Thate07g08940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7388 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1693, evm.TU.LG03.963 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011617, Pov_00019414 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb2G14485, Lb3G18376, Lb6G29925, Lb6G30650, Lb6G30875 ... |
| Poaceae | Echinochloa crus-galli | 5 | AH01.349, AH07.4034, BH01.377, BH07.3847, CH01.228 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0524700.1, HORVU.MOREX.r3.6HG0633160.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_020029, gene-QYE76_020033, gene-QYE76_020034 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G026150, Oco04G026580, Oco05G027090, Oco06G028120 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g58280.1, LOC_Os03g60140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G035300, gene-BS78_04G328800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105740 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G742600, Tel6E01G768200, Tel6E01G768300 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG067090, gene_TRIDC5BG072280 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G469100.2, TraesCS5B02G481600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb062220_P003, Zm00001eb259400_P001 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG10.68, evm.TU.LG13.1404, evm.TU.LG17.63 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g33240, gene.Posoc06g10850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.298, evm.TU.Scaffold_17_RagTag.665 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14122, nbisL1-mrna-16573, nbisL1-mrna-23348 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13884, nbisL1-mrna-7403 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14269, nbisL1-mrna-19984 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.178, evm.TU.utg000013l.354 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004299, Maker00010071 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10755, nbisL1-mrna-421 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14384, nbisL1-mrna-18916 |
| Salicaceae | Populus euphratica | 3 | populus_peu06714, populus_peu19155, populus_peu20596 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614127, gene-LOC132640444 |
| Solanaceae | Solanum chilense | 2 | SOLCI002061500, SOLCI006470300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018063, gene-LOC107018460 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11296_chr05_-, gene_4762 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0114, TC02G3076 |
| Zosteraceae | Zostera marina | 2 | Zosma02g22160.v3.1, Zosma05g34070.v3.1 |