halophFGD

Basic Information

Locus ID: Ag8G01983

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Eukaryotic initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	253829399	253834533	+	Ag8G01983

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.36	46,364.86 Da	38.90	96.73	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18787	SF2_C_DEAD	250	380	2.2553E-62	-
Pfam	PF00271	Helicase conserved C-terminal domain	263	371	1.4E-30	IPR001650
Pfam	PF00270	DEAD/DEAH box helicase	62	224	9.2E-43	IPR011545
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	106	393	6.64E-73	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	73	115	1.43E-6	IPR027417
Gene3D	G3DSA:3.40.50.300	-	27	245	8.4E-65	IPR027417
Gene3D	G3DSA:3.40.50.300	-	246	410	2.8E-59	IPR027417
SMART	SM00490	helicmild6	290	371	8.0E-34	IPR001650
SMART	SM00487	ultradead3	56	253	4.4E-57	IPR014001
ProSiteProfiles	PS51195	DEAD-box RNA helicase Q motif profile.	37	65	10.297132	IPR014014
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	68	238	27.472488	IPR014001
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	249	410	26.647163	IPR001650

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003724 (RNA helicase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13025 (ATP-dependent RNA helicase [EC:5.6.2.7])

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport) ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko03040 (Spliceosome) map03040 (Spliceosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G19760.1	eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles.
RefSeq	XP_017223261.1	PREDICTED: eukaryotic initiation factor 4A-3 [Daucus carota subsp. sativus]
Swiss-Prot	P41380	Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1
TrEMBL	A0A251UHB0	Putative eukaryotic initiation factor 4A-3 OS=Helianthus annuus OX=4232 GN=IF4A3 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	104.765091	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	85.915276	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	89.643059	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	88.310455	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	84.316605	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	84.615509	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	78.599609	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	75.07988	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	151.701965	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	150.274765	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	154.33519	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	173.989029	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	158.992188	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	150.03833	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	72.700798	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	72.899216	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	91.410721	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	90.538643	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	83.914284	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	77.289017	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	99.070389	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	110.546089	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	124.415436	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	119.041924	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	116.256927	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	100.713837	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	99.046127	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	95.294289	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	107.605782	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	47.655731		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	66.576614		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	55.715855		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	92.556717		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	72.320198		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	83.91037		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	51.411385		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	47.962803		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	45.51313		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	112.49559	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	66.519127	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	57.470299	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	102.959023	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	115.042923	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	173.181824	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	157.645554	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	126.252419	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	132.759933	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	115.955544	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	117.769012	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	108.085945	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg18030, jg23950, jg27270, jg36647, jg36903, jg4590, jg4640 ... jg7945
Aizoaceae	Mesembryanthemum crystallinum	4	gene_6755, gene_8081, gene_8082, gene_9431
Amaranthaceae	Atriplex hortensis	2	Ah015581, Ah034500
Amaranthaceae	Beta vulgaris	3	BVRB_2g034400, BVRB_8g189830, BVRB_9g203030
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg19755, Sbi_jg19756, Sbi_jg23471, Sbi_jg23473 ... Sbi_jg59412, Sbi_jg63236
Amaranthaceae	Salicornia europaea	3	Seu_jg17278, Seu_jg17279, Seu_jg23657
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011237, GOSA_00028107, GOSA_00028109
Amaranthaceae	Suaeda glauca	4	Sgl43089, Sgl47901, Sgl63656, Sgl68153
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000011237, gene:ENSEOMG00000016890 ... gene:ENSEOMG00000018752, gene:ENSEOMG00000019246, gene:ENSEOMG00000019465, gene:ENSEOMG00000020731, gene:ENSEOMG00000031858, gene:ENSEOMG00000045672, gene:ENSEOMG00000050432, gene:ENSEOMG00000051256
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0014060, CQ.Regalona.r1.2AG0014070 ... CQ.Regalona.r1.2BG0016020, CQ.Regalona.r1.2BG0016030, CQ.Regalona.r1.8AG0013490, CQ.Regalona.r1.8BG0014820
Anacardiaceae	Pistacia vera	5	pistato.v30117410, pistato.v30224710, pistato.v30224730 ... pistato.v30259600, pistato.v30261340
Apiaceae	Apium graveolens	7	Ag5G01561, Ag7G00390, Ag7G01853, Ag8G00261, Ag8G01983 ... AgUnG00091, AgUnG00092
Arecaceae	Cocos nucifera	6	COCNU_02G001330, COCNU_02G019540, COCNU_03G015520 ... COCNU_09G006150, COCNU_11G013450, COCNU_11G013460
Arecaceae	Phoenix dactylifera	7	gene-LOC103702037, gene-LOC103709577, gene-LOC103713107 ... gene-LOC103713109, gene-LOC103715524, gene-LOC103717373, gene-LOC103723891
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2362.V1.1, AsparagusV1_01.621.V1.1 ... AsparagusV1_05.2352.V1.1, AsparagusV1_06.1043.V1.1
Asteraceae	Flaveria trinervia	7	Ftri13G30554, Ftri15G17613, Ftri3G12718, Ftri3G20538 ... Ftri4G15456, Ftri7G08567, Ftri8G25313
Brassicaceae	Arabidopsis thaliana	5	AT1G51380.1, AT1G54270.1, AT1G72730.1, AT3G13920.2 ... AT3G19760.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10011528m.g.v1.0, Thhalv10011544m.g.v1.0 ... Thhalv10018626m.g.v1.0, Thhalv10020824m.g.v1.0, Thhalv10020832m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g38030.v2.2, Sp1g40700.v2.2, Sp3g12160.v2.2 ... Sp3g17780.v2.2, Sp5g27790.v2.2
Brassicaceae	Brassica nigra	13	BniB01g044200.2N, BniB01g051250.2N, BniB01g055170.2N ... BniB02g063060.2N, BniB03g050960.2N, BniB05g070020.2N, BniB06g026370.2N, BniB07g001610.2N, BniB07g004620.2N, BniB07g030750.2N, BniB07g030780.2N, BniB07g051010.2N, BniB07g055250.2N
Casuarinaceae	Casuarina equisetifolia	10	Ceq01G0301, Ceq01G0309, Ceq02G0842, Ceq03G2284, Ceq05G0696 ... Ceq06G0836, Ceq06G1704, Ceq06G2354, Ceq09G0627, Ceq09G0628
Casuarinaceae	Casuarina glauca	10	Cgl01G0321, Cgl02G0856, Cgl03G2420, Cgl05G0707, Cgl06G0861 ... Cgl06G1766, Cgl06G2478, Cgl09G0671, Cgl09G0672, Cgl09G0684
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno12g04520, gene.Cymno13g02290, gene.Cymno17g04600
Dunaliellaceae	Dunaliella salina	3	Dusal.0006s00020.v1.0, Dusal.0552s00009.v1.0 ... Dusal.0888s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03840, gene.Thate02g00760, gene.Thate05g18780
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-231, nbisL1-mrna-3338, nbisL1-mrna-4598 ... nbisL1-mrna-7482, nbisL1-mrna-9392
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.89, evm.TU.LG03.943, evm.TU.LG07.1262 ... evm.TU.LG07.652
Plantaginaceae	Plantago ovata	3	Pov_00003711, Pov_00013441, Pov_00015332
Plumbaginaceae	Limonium bicolor	9	Lb0G36968, Lb2G08398, Lb2G14201, Lb2G14216, Lb3G16956 ... Lb3G16957, Lb3G18035, Lb3G18041, Lb4G21541
Poaceae	Echinochloa crus-galli	12	AH06.2865, AH07.361, AH07.4042, AH07.880, BH06.2663 ... BH07.1009, BH07.3856, CH01.1256, CH03.4462, CH06.2976, CH07.3921, CH07.761
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0101490, gene-QOZ80_2AG0151600 ... gene-QOZ80_2BG0154870, gene-QOZ80_2BG0206970, gene-QOZ80_4AG0307350, gene-QOZ80_5AG0399360, gene-QOZ80_5BG0448050, gene-QOZ80_6AG0549840, gene-QOZ80_6BG0503410
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0210840.1, HORVU.MOREX.r3.6HG0558540.1 ... HORVU.MOREX.r3.6HG0633530.1, HORVU.MOREX.r3.7HG0702610.1, HORVU.MOREX.r3.7HG0727510.1
Poaceae	Lolium multiflorum	7	gene-QYE76_006390, gene-QYE76_006463, gene-QYE76_008284 ... gene-QYE76_020352, gene-QYE76_021631, gene-QYE76_035484, gene-QYE76_035764
Poaceae	Oryza coarctata	11	Oco01G015450, Oco02G015790, Oco03G002380, Oco03G005800 ... Oco03G005810, Oco04G002300, Oco04G006020, Oco06G017810, Oco11G016450, Oco12G016700, Oco21G004410
Poaceae	Paspalum vaginatum	5	gene-BS78_03G064300, gene-BS78_03G064700 ... gene-BS78_04G036500, gene-BS78_04G090300, gene-BS78_10G253900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0401086, Pt_Chr0604848, Pt_Chr0605387
Poaceae	Sporobolus alterniflorus	13	Chr02G032810, Chr04G019820, Chr05G001030, Chr06G020750 ... Chr06G035000, Chr09G026920, Chr0G010140, Chr10G021450, Chr11G001120, Chr13G000230, Chr15G026290, Chr19G007120, Chr27G009790
Poaceae	Thinopyrum elongatum	8	Tel2E01G942100, Tel5E01G690000, Tel6E01G254100 ... Tel6E01G368300, Tel6E01G775100, Tel6E01G775300, Tel7E01G532700, Tel7E01G703700
Poaceae	Triticum dicoccoides	9	gene_TRIDC6AG015330, gene_TRIDC6AG027230 ... gene_TRIDC6AG027280, gene_TRIDC6AG061100, gene_TRIDC6BG021100, gene_TRIDC6BG033410, gene_TRIDC6BG071460, gene_TRIDC7AG058390, gene_TRIDC7BG051060
Poaceae	Triticum aestivum	19	TraesCS2A02G552800.1, TraesCS2B02G584200.1 ... TraesCS2D02G553400.1, TraesCS2D02G554300.1, TraesCS6A02G116200.1, TraesCS6A02G186600.1, TraesCS6A02G186800.1, TraesCS6A02G416700.1, TraesCS6B02G144000.1, TraesCS6B02G217700.1, TraesCS6B02G217800.1, TraesCS6B02G472700.1, TraesCS6D02G105000.1, TraesCS6D02G173700.3, TraesCS6D02G401900.1, TraesCS7A02G310000.1, TraesCS7A02G419400.1, TraesCS7B02G320000.1, TraesCS7D02G412200.1
Poaceae	Zea mays	6	Zm00001eb190630_P001, Zm00001eb226920_P001 ... Zm00001eb232200_P002, Zm00001eb240040_P001, Zm00001eb259470_P001, Zm00001eb272920_P004
Poaceae	Zoysia japonica	6	nbis-gene-29965, nbis-gene-33746, nbis-gene-34308 ... nbis-gene-40699, nbis-gene-47426, nbis-gene-9633
Poaceae	Zoysia macrostachya	6	Zma_g12187, Zma_g14948, Zma_g17479, Zma_g26194, Zma_g31084 ... Zma_g33349
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.1988, evm.TU.LG05.2220, evm.TU.LG07.802 ... evm.TU.LG08.1559, evm.TU.LG14.287, evm.TU.LG15.127, evm.TU.LG19.20, evm.TU.LG22.453, evm.TU.LG24.250
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g10950, gene.Posoc10g04890
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.1375 ... evm.TU.Scaffold_10_RagTag.694, evm.TU.Scaffold_15_RagTag.341, evm.TU.Scaffold_17_RagTag.669, evm.TU.Scaffold_18_RagTag.687, evm.TU.Scaffold_4_RagTag.1818
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-13797, nbisL1-mrna-17178, nbisL1-mrna-23352 ... nbisL1-mrna-25759, nbisL1-mrna-26612, nbisL1-mrna-27630, nbisL1-mrna-27668, nbisL1-mrna-27671, nbisL1-mrna-27709, nbisL1-mrna-7111
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-14506, nbisL1-mrna-7676, nbisL1-mrna-8093 ... nbisL1-mrna-8888, nbisL1-mrna-8954
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-19994, nbisL1-mrna-4611, nbisL1-mrna-8066 ... nbisL1-mrna-8747, nbisL1-mrna-8945
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.210, evm.TU.utg000004l.50 ... evm.TU.utg000008l.1027, evm.TU.utg000013l.359, evm.TU.utg000023l.38, evm.TU.utg000033l.487
Rhizophoraceae	Kandelia obovata	6	Maker00000055, Maker00004182, Maker00004381, Maker00004787 ... Maker00014572, Maker00018900
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-10750, nbisL1-mrna-13992, nbisL1-mrna-14858 ... nbisL1-mrna-16464, nbisL1-mrna-18333, nbisL1-mrna-3900
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-1116, nbisL1-mrna-14378, nbisL1-mrna-14846 ... nbisL1-mrna-22898, nbisL1-mrna-2625, nbisL1-mrna-8022, nbisL1-mrna-8172
Salicaceae	Populus euphratica	11	populus_peu02609, populus_peu02613, populus_peu12625 ... populus_peu13947, populus_peu22056, populus_peu22065, populus_peu23152, populus_peu24345, populus_peu26593, populus_peu28337, populus_peu37881
Solanaceae	Lycium barbarum	7	gene-LOC132604232, gene-LOC132604234, gene-LOC132613923 ... gene-LOC132619740, gene-LOC132635930, gene-LOC132640847, gene-LOC132645464
Solanaceae	Solanum chilense	5	SOLCI000318900, SOLCI001353000, SOLCI002413600 ... SOLCI003389300, SOLCI003577100
Solanaceae	Solanum pennellii	6	gene-LOC107004776, gene-LOC107007006, gene-LOC107007007 ... gene-LOC107022595, gene-LOC107024598, gene-LOC107028541
Tamaricaceae	Reaumuria soongarica	6	STRG.21618_chr08_-, STRG.32344_chr09_-, STRG.8158_chr05_- ... gene_14265, gene_3999, gene_505
Tamaricaceae	Tamarix chinensis	5	TC02G1339, TC05G0391, TC05G1664, TC06G2628, TC11G1425
Zosteraceae	Zostera marina	4	Zosma04g15770.v3.1, Zosma04g15790.v3.1, Zosma05g19360.v3.1 ... Zosma06g26830.v3.1