Basic Information
Locus ID:
Ag8G01977
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
negative regulation of inclusion body assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 253598163 | 253621528 | - | Ag8G01977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 535,403.75 Da | 48.68 | 94.96 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 4720 | 4760 | 4.5E-9 | - |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 34 | 138 | 6.88E-15 | IPR036890 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4720 | 4761 | 1.8E-8 | - |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 1388 | 1571 | 2.11E-13 | IPR036890 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4694 | 4766 | 1.6E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 4721 | 4754 | 3.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 4721 | 4755 | 11.766381 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3427 | 3443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3419 | 3443 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23110.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_017221913.1 | PREDICTED: sacsin [Daucus carota subsp. sativus] | 0 |
| Q9NZJ4 | Sacsin OS=Homo sapiens OX=9606 GN=SACS PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YQQ4 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026901 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.691339 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.167636 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.558584 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.535201 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.526834 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.091654 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.156905 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.200831 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.09783 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.454317 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.901879 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.021438 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.791501 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.301496 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.555847 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.137446 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.12058 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.813485 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.934789 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.881591 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.128357 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.586991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.947723 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.56356 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.83926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.895647 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.670083 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.174933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.956698 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.210545 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.120655 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.464141 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.212368 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.123902 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.17548 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.494576 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.508384 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.283283 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.286979 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.44517 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.589768 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.918969 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.609272 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.537868 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.056689 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.082059 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.872038 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.90552 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.61145 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.575811 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15519, jg15520, jg15521 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20517 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038501 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g203060, BVRB_9g203070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14723, Sbi_jg55498 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26052 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012539 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78101, Sgl80607 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016231, gene:ENSEOMG00000036445 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0021330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224850 |
| Apiaceae | Apium graveolens | 3 | Ag11G03650, Ag5G01576, Ag8G01977 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G006590 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716924 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2273.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G28303, Ftri8G30209 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003499m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g24010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g076400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0588 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05360 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0723s00002.v1.0, Dusal.0723s00003.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11685 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.937 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005418 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34375 |
| Poaceae | Echinochloa crus-galli | 3 | BH09.2932, BH09.2933, CH09.3142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299580, gene-QOZ80_4BG0330270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047432 |
| Poaceae | Oryza coarctata | 2 | Oco07G019130, Oco08G018390 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G282200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300164 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001020, Chr23G001030, Chr26G018260 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1014600, Tel2E01G951100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG077140, gene_TRIDC2BG085010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G556200.1, TraesCS2B02G571400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6183 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22214 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1450, evm.TU.LG21.1147 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g10530 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.445 |
| Salicaceae | Populus euphratica | 4 | populus_peu13938, populus_peu13939, populus_peu13940 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622327 |
| Solanaceae | Solanum chilense | 1 | SOLCI004514600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010837 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6590 |
| Tamaricaceae | Tamarix chinensis | 4 | TC07G0888, TC07G0889, TC07G0890, TC07G0891 |
| Zosteraceae | Zostera marina | 1 | Zosma01g21600.v3.1 |