halophFGD

Basic Information

Locus ID: Ag8G01951

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	251937684	251937977	-	Ag8G01951

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	11,555.09 Da	31.64	73.30	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01763	Ubl_SUMO_like	14	84	6.61104E-17	-
Pfam	PF11976	Ubiquitin-2 like Rad60 SUMO-like	14	83	6.8E-11	IPR022617
SUPERFAMILY	SSF54236	Ubiquitin-like	5	90	8.04E-16	IPR029071
Gene3D	G3DSA:3.10.20.90	-	2	90	1.2E-23	-

KEGG Pathway

KO Term:

K12160 (small ubiquitin-related modifier)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G55170.1	small ubiquitin-like modifier 3. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
RefSeq	XP_017217780.1	PREDICTED: small ubiquitin-related modifier 2-A-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FLP5	Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1 SV=1
TrEMBL	A0A175YS20	Rad60-SLD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026876 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.064088	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg12833, jg21549, jg24566, jg38400
Aizoaceae	Mesembryanthemum crystallinum	5	gene_12218, gene_12219, gene_19208, gene_19209, gene_5389
Amaranthaceae	Atriplex hortensis	4	Ah008875, Ah008876, Ah012688, Ah028292
Amaranthaceae	Beta vulgaris	2	BVRB_4g088830, BVRB_7g167780
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg18295, Sbi_jg26565, Sbi_jg34000, Sbi_jg36674
Amaranthaceae	Salicornia europaea	2	Seu_jg15089, Seu_jg4634
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011903, GOSA_00017455
Amaranthaceae	Suaeda glauca	5	Sgl23444, Sgl28570, Sgl28745, Sgl73849, Sgl77351
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006748, gene:ENSEOMG00000008425 ... gene:ENSEOMG00000008491, gene:ENSEOMG00000027759, gene:ENSEOMG00000029934, gene:ENSEOMG00000036253, gene:ENSEOMG00000040380, gene:ENSEOMG00000041590
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0023330, CQ.Regalona.r1.4AG0023350 ... CQ.Regalona.r1.4BG0024640, CQ.Regalona.r1.4BG0024650, CQ.Regalona.r1.7AG0010120, CQ.Regalona.r1.7BG0012250
Anacardiaceae	Pistacia vera	2	pistato.v30014380, pistato.v30017900
Apiaceae	Apium graveolens	3	Ag10G00809, Ag5G01873, Ag8G01951
Arecaceae	Cocos nucifera	4	COCNU_02G008540, COCNU_02G014640, COCNU_15G004410 ... contig69436837G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695948, gene-LOC103710595, gene-LOC103710819 ... gene-LOC120105632
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.421.V1.1, AsparagusV1_04.1370.V1.1 ... AsparagusV1_05.3189.V1.1, AsparagusV1_09.795.V1.1, AsparagusV1_10.548.V1.1
Asteraceae	Flaveria trinervia	7	Ftri14G10346, Ftri14G11849, Ftri14G17667, Ftri15G15092 ... Ftri3G27886, Ftri7G09573, Ftri8G11220
Brassicaceae	Arabidopsis thaliana	7	AT4G26840.1, AT5G48700.1, AT5G48710.1, AT5G55160.2 ... AT5G55170.1, AT5G55855.1, AT5G55856.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10005530m.g.v1.0, Thhalv10015081m.g.v1.0 ... Thhalv10015094m.g.v1.0, Thhalv10015519m.g.v1.0, Thhalv10026654m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g19110.v2.2, Sp6g17100.v2.2, Sp7g24800.v2.2
Brassicaceae	Brassica nigra	8	BniB02g033820.2N, BniB02g034610.2N, BniB02g082630.2N ... BniB03g007480.2N, BniB03g012350.2N, BniB05g010560.2N, BniB05g035040.2N, BniB08g015300.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq01G1346, Ceq01G2223, Ceq01G2231, Ceq02G0302, Ceq02G2347 ... Ceq06G1983, Ceq09G0359
Casuarinaceae	Casuarina glauca	7	Cgl01G1508, Cgl02G0315, Cgl02G1009, Cgl02G1280, Cgl02G2434 ... Cgl04G2822, Cgl06G2091
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno08g02980
Dunaliellaceae	Dunaliella salina	3	Dusal.0126s00004.v1.0, Dusal.0621s00011.v1.0 ... Dusal.0770s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g02060, gene.Thate05g16390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9848
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.1576, evm.TU.LG04.2125, evm.TU.LG11.1159 ... evm.TU.LG11.557, evm.TU.LG11.559
Plantaginaceae	Plantago ovata	11	Pov_00001141, Pov_00003838, Pov_00004366, Pov_00004367 ... Pov_00008503, Pov_00008506, Pov_00008766, Pov_00008767, Pov_00009548, Pov_00010590, Pov_00040175
Plumbaginaceae	Limonium bicolor	5	Lb2G15033, Lb3G20750, Lb4G22299, Lb4G22300, Lb4G25402
Poaceae	Echinochloa crus-galli	6	AH01.1549, AH02.4316, BH01.1754, BH02.4347, CH01.1832 ... CH02.4392
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0044450, gene-QOZ80_1BG0090240 ... gene-QOZ80_1BG0094470, gene-QOZ80_5BG0437620
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0309800.1, HORVU.MOREX.r3.3HG0309820.1
Poaceae	Lolium multiflorum	3	gene-QYE76_014972, gene-QYE76_057385, gene-QYE76_057386
Poaceae	Oryza coarctata	4	Oco01G028420, Oco02G029500, Oco02G029510, Oco14G011430
Poaceae	Oryza sativa	2	LOC_Os01g68940.1, LOC_Os01g68950.1
Poaceae	Paspalum vaginatum	3	gene-BS78_09G210300, gene-BS78_09G211300 ... gene-BS78_09G211500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0600503, Pt_Chr0600504
Poaceae	Sporobolus alterniflorus	7	Chr02G002590, Chr03G022730, Chr04G014780, Chr05G031840 ... Chr08G019290, Chr19G014740, Chr27G001370
Poaceae	Thinopyrum elongatum	2	Tel3E01G672900, Tel3E01G673100
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG060130, gene_TRIDC3AG060140 ... gene_TRIDC3BG067930, gene_TRIDC3BG067950
Poaceae	Triticum aestivum	5	TraesCS3A02G424000.1, TraesCS3B02G459900.1 ... TraesCS3B02G460000.1, TraesCS3D02G419200.1, TraesCS3D02G419300.1
Poaceae	Zea mays	2	Zm00001eb364660_P001, Zm00001eb364680_P001
Poaceae	Zoysia japonica	3	nbis-gene-11003, nbis-gene-28358, nbis-gene-57125
Poaceae	Zoysia macrostachya	2	Zma_g11807, Zma_g9262
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.496, evm.TU.LG02.497, evm.TU.LG07.45 ... evm.TU.LG08.168, evm.TU.LG09.1740, evm.TU.LG09.1741, evm.TU.LG12.688
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g04270
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_5_RagTag.1217, evm.TU.Scaffold_5_RagTag.1557 ... evm.TU.Scaffold_7_RagTag.141, evm.TU.Scaffold_9_RagTag.1121
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-11689, nbisL1-mrna-12046, nbisL1-mrna-1706 ... nbisL1-mrna-19585, nbisL1-mrna-20380, nbisL1-mrna-20521, nbisL1-mrna-21064
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-1215, nbisL1-mrna-14864, nbisL1-mrna-8599 ... nbisL1-mrna-9085
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10950, nbisL1-mrna-11233, nbisL1-mrna-22277 ... nbisL1-mrna-2629
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.174, evm.TU.utg000003l.695 ... evm.TU.utg000006l.710, evm.TU.utg000006l.898, evm.TU.utg000028l.85
Rhizophoraceae	Kandelia obovata	4	Maker00001830, Maker00010392, Maker00013274, Maker00013724
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10426, nbisL1-mrna-12251, nbisL1-mrna-1365 ... nbisL1-mrna-8049, nbisL1-mrna-9831
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-15499, nbisL1-mrna-18118, nbisL1-mrna-19916 ... nbisL1-mrna-22651, nbisL1-mrna-4945
Salicaceae	Populus euphratica	4	populus_peu17917, populus_peu26982, populus_peu31042 ... populus_peu31043
Solanaceae	Lycium barbarum	10	gene-LOC132600850, gene-LOC132610077, gene-LOC132610495 ... gene-LOC132611387, gene-LOC132612732, gene-LOC132614576, gene-LOC132616634, gene-LOC132617422, gene-LOC132636668, gene-LOC132640780
Solanaceae	Solanum chilense	6	SOLCI000134700, SOLCI002062100, SOLCI004418800 ... SOLCI004418900, SOLCI005761200, SOLCI006755200
Solanaceae	Solanum pennellii	5	gene-LOC107007516, gene-LOC107024154, gene-LOC107026005 ... gene-LOC107029314, gene-LOC107030885
Tamaricaceae	Reaumuria soongarica	4	STRG.816_chr01_+, gene_10011, gene_12123, gene_14638
Tamaricaceae	Tamarix chinensis	4	TC01G2372, TC03G1361, TC06G0390, TC06G1115
Zosteraceae	Zostera marina	1	Zosma04g01500.v3.1