halophFGD

Basic Information

Locus ID: Ag8G01943

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	251534780	251539037	-	Ag8G01943

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.35	64,845.26 Da	43.86	93.81	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	262	554	3.69003E-53	-
Pfam	PF00400	WD domain, G-beta repeat	474	511	0.0081	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	516	554	5.7E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	260	296	4.1E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	346	384	0.046	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	256	554	1.14E-65	IPR036322
Gene3D	G3DSA:2.130.10.10	-	253	519	2.6E-58	IPR015943
Gene3D	G3DSA:2.130.10.10	-	520	580	2.3E-9	IPR015943
SMART	SM00320	WD40_4	303	342	0.0021	IPR001680
SMART	SM00320	WD40_4	515	555	9.7E-12	IPR001680
SMART	SM00320	WD40_4	386	426	2.2	IPR001680
SMART	SM00320	WD40_4	428	466	9.1	IPR001680
SMART	SM00320	WD40_4	470	512	0.8	IPR001680
SMART	SM00668	ctlh	92	149	9.4E-6	IPR006595
SMART	SM00320	WD40_4	345	384	0.0088	IPR001680
SMART	SM00320	WD40_4	258	297	5.9E-8	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	310	347	9.520146	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	265	299	10.311051	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	522	564	13.816853	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	522	558	10.996502	-
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	101	149	10.665724	IPR006595
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	59	91	8.845085	IPR006594
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	265	306	12.546961	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	310	351	12.513543	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	284	298	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	371	385	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	371	385	1.3E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	542	556	1.3E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	284	298	1.3E-5	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K22382 (WD repeat-containing protein 26)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G08560.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_017222556.1	PREDICTED: WD repeat-containing protein 26-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNN2	WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1
TrEMBL	A0A175YQT5	WD repeat-containing protein 26 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026871 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	51.616631	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	36.593307	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	43.020897	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	42.78022	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	45.032452	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	49.966316	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	43.687336	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	55.564423	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	27.165409	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	27.841381	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	30.109602	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	42.745258	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	30.920181	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	30.544523	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.892794	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	21.243946	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	25.727339	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	28.974558	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	22.044689	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	30.861265	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.835711	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.158224	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	27.188065	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	29.585165	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.715368	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	29.088137	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	28.093063	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	22.475197	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	26.70994	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	15.99125		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	20.394958		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	18.651981		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	46.569565		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	31.075947		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	49.691475		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	28.394377		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	16.272272		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	22.44342		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	21.963583	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	18.447979	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.088463	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	29.230585	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	26.573812	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	23.978785	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	21.395937	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	28.14393	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	26.63266	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	27.477633	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	29.310265	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	30.075144	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg16228, jg19040, jg19043, jg19045, jg19048, jg24101 ... jg37461
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17794, gene_5317
Amaranthaceae	Atriplex hortensis	4	Ah027031, Ah029123, Ah037565, Ah037594
Amaranthaceae	Beta vulgaris	2	BVRB_6g132130, BVRB_7g166270
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13522, Sbi_jg52363, Sbi_jg59153, Sbi_jg63483
Amaranthaceae	Salicornia europaea	2	Seu_jg23419, Seu_jg9489
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00023186, GOSA_00023187, GOSA_00023189, GOSA_00023377 ... GOSA_00023378, GOSA_00029520
Amaranthaceae	Suaeda glauca	4	Sgl33515, Sgl38864, Sgl72428, Sgl75977
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000001394, gene:ENSEOMG00000003013 ... gene:ENSEOMG00000007855, gene:ENSEOMG00000026627, gene:ENSEOMG00000036103, gene:ENSEOMG00000040929, gene:ENSEOMG00000052547
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0021550, CQ.Regalona.r1.6BG0022730 ... CQ.Regalona.r1.7AG0011230, CQ.Regalona.r1.7BG0013400, CQ.Regalona.r1.9AG0000100, CQ.Regalona.r1.9BG0022010
Anacardiaceae	Pistacia vera	8	pistato.v30013160, pistato.v30015190, pistato.v30201810 ... pistato.v30201820, pistato.v30202660, pistato.v30202690, pistato.v30202700, pistato.v30212900
Apiaceae	Apium graveolens	4	Ag10G00843, Ag1G01685, Ag5G01877, Ag8G01943
Arecaceae	Cocos nucifera	6	COCNU_01G015670, COCNU_07G009010, scaffold002739G000010 ... scaffold009168G000010, scaffold009168G000020, scaffold013376G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695548, gene-LOC103696220, gene-LOC103707677 ... gene-LOC103722740
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.613.V1.1, AsparagusV1_06.39.V1.1 ... AsparagusV1_08.2950.V1.1, AsparagusV1_10.1880.V1.1, AsparagusV1_10.1881.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G28836, Ftri13G11884, Ftri3G21437
Brassicaceae	Arabidopsis thaliana	2	AT5G08560.1, AT5G43920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003179m.g.v1.0, Thhalv10013060m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g08740.v2.2, Sp2g26750.v2.2, Sp6g34330.v2.2
Brassicaceae	Brassica nigra	5	BniB02g052620.2N, BniB04g001790.2N, BniB04g017400.2N ... BniB06g011980.2N, BniB08g003910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2175, Ceq03G1989, Ceq06G2280
Casuarinaceae	Casuarina glauca	3	Cgl02G2252, Cgl03G2137, Cgl06G2390
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g11340
Dunaliellaceae	Dunaliella salina	1	Dusal.1069s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g03360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10267, nbisL1-mrna-2193, nbisL1-mrna-6802
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1576, evm.TU.LG03.2506
Plantaginaceae	Plantago ovata	2	Pov_00001348, Pov_00024562
Plumbaginaceae	Limonium bicolor	3	Lb3G20752, Lb5G28636, Lb6G30403
Poaceae	Echinochloa crus-galli	6	AH01.1833, AH08.230, BH01.2128, BH08.214, CH01.2246 ... CH08.251
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0127160, gene-QOZ80_2BG0182650 ... gene-QOZ80_8AG0616230, gene-QOZ80_8BG0643740
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0040900.1, HORVU.MOREX.r3.5HG0440360.2 ... HORVU.MOREX.r3.7HG0702990.1
Poaceae	Lolium multiflorum	4	gene-QYE76_001411, gene-QYE76_011398, gene-QYE76_033585 ... gene-QYE76_033586
Poaceae	Oryza coarctata	4	Oco03G008170, Oco04G008570, Oco19G005600, Oco20G005520
Poaceae	Oryza sativa	2	LOC_Os02g19210.1, LOC_Os10g32770.2
Poaceae	Paspalum vaginatum	2	gene-BS78_01G211600, gene-BS78_07G032000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0402545, Pt_Chr0502527, Pt_Chr0704050, Pt_Chr0705494
Poaceae	Sporobolus alterniflorus	8	Chr06G013250, Chr09G010480, Chr0G025840, Chr0G029730 ... Chr16G001050, Chr17G001030, Chr20G013170, Chr29G012160
Poaceae	Thinopyrum elongatum	3	Tel1E01G275500, Tel5E01G152900, Tel7E01G535200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG022320, gene_TRIDC1BG027020 ... gene_TRIDC5AG011420, gene_TRIDC5BG013370, gene_TRIDC7AG043360, gene_TRIDC7BG034630
Poaceae	Triticum aestivum	9	TraesCS1A02G146900.1, TraesCS1B02G164700.1 ... TraesCS1D02G145000.1, TraesCS5A02G074900.1, TraesCS5B02G081300.1, TraesCS5D02G088400.1, TraesCS7A02G311000.1, TraesCS7B02G210600.1, TraesCS7D02G307300.1
Poaceae	Zea mays	3	Zm00001eb046310_P001, Zm00001eb173190_P001 ... Zm00001eb261740_P004
Poaceae	Zoysia japonica	3	nbis-gene-19262, nbis-gene-39178, nbis-gene-41486
Poaceae	Zoysia macrostachya	3	Zma_g16159, Zma_g22416, Zma_g23559
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.510, evm.TU.LG03.2384, evm.TU.LG03.2385 ... evm.TU.LG04.256, evm.TU.LG17.1428, evm.TU.LG17.1430
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g07110, gene.Posoc08g08590
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.6, evm.TU.Scaffold_17_RagTag.1002 ... evm.TU.Scaffold_17_RagTag.1003, evm.TU.Scaffold_5_RagTag.1161
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-11632, nbisL1-mrna-23725, nbisL1-mrna-23726 ... nbisL1-mrna-26291
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11078, nbisL1-mrna-12120, nbisL1-mrna-6119
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10237, nbisL1-mrna-17363, nbisL1-mrna-21879 ... nbisL1-mrna-21880
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.7, evm.TU.utg000006l.421 ... evm.TU.utg000013l.560
Rhizophoraceae	Kandelia obovata	3	Maker00004520, Maker00004641, Maker00014113
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10956, nbisL1-mrna-11715, nbisL1-mrna-9875
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19862, nbisL1-mrna-23068, nbisL1-mrna-23069 ... nbisL1-mrna-2916
Salicaceae	Populus euphratica	6	populus_peu05939, populus_peu15013, populus_peu19808 ... populus_peu26662, populus_peu26667, populus_peu32670
Solanaceae	Lycium barbarum	4	gene-LOC132610349, gene-LOC132618795, gene-LOC132636700 ... gene-LOC132640864
Solanaceae	Solanum chilense	4	SOLCI001770700, SOLCI002039300, SOLCI003769700 ... SOLCI006669800
Solanaceae	Solanum pennellii	4	gene-LOC107005623, gene-LOC107020475, gene-LOC107025686 ... gene-LOC107029499
Tamaricaceae	Reaumuria soongarica	3	STRG.2139_chr01_+, STRG.8197_chr05_-, gene_1632
Tamaricaceae	Tamarix chinensis	3	TC01G0524, TC01G2384, TC03G1387
Zosteraceae	Zostera marina	1	Zosma06g11670.v3.1