Basic Information
Locus ID:
Ag8G01936
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Inactive leucine-rich repeat receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 251216732 | 251221164 | + | Ag8G01936 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 69,752.52 Da | 36.90 | 91.15 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 4 | 36 | 2.8E-6 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 333 | 597 | 1.8E-35 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 334 | 600 | 3.28E-56 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 7 | 193 | 1.02E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 406 | 622 | 1.0E-43 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 316 | 405 | 1.1E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 160 | 208 | 2.6E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 3 | 159 | 5.8E-31 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 330 | 604 | 32.555561 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 635 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10850.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017222433.1 | PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 [Daucus carota subsp. sativus] | 0 |
| Q84MA9 | Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana OX=3702 GN=At1g60630 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YQU8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026861 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.848789 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.293217 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.665049 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.606689 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.159758 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.573385 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.416935 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.748225 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.41361 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.397096 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.288812 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.005099 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.421644 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.537299 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.23823 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.266077 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.773625 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.778169 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.570494 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.904658 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.781045 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.338395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.066192 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.509722 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.370838 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.505014 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.630989 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.242416 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.538644 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.208265 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.201534 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.508225 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.234947 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.050695 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.048061 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.62375 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.444105 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.090086 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.371149 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.117269 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.139021 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.195767 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.400158 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.402563 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.651265 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.934134 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5070, jg7417, jg9723 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25874 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037308 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11827, Sbi_jg46585 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21062 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021040 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68917 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015662, gene:ENSEOMG00000039143 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0007430, CQ.Regalona.r1.9BG0014590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30219790 |
| Apiaceae | Apium graveolens | 3 | Ag3G00483, Ag5G01885, Ag8G01936 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G009420, COCNU_09G006110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723877, gene-LOC120104244 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1015.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G15674, Ftri3G22077 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10850.1, AT1G60630.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007013m.g.v1.0, Thhalv10023334m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g09550.v2.2, Sp2g04090.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g059740.2N, BniB04g028780.2N, BniB07g046550.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1617 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1740 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07920 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g16650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5561 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.969 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025303 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31304, Lb7G34112 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.4043, BH07.3857, CH07.3922 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151610, gene-QOZ80_2BG0206980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0633560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056870 |
| Poaceae | Oryza coarctata | 2 | Oco03G026210, Oco04G026630 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G329600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600008, Pt_Chr0600021 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026930, Chr13G000220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G776200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG061200, gene_TRIDC6BG071310 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G417300.1, TraesCS6B02G472100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb259460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39736 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2217, evm.TU.LG23.449 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.694 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23380 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14188 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20013 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.372 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004479 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10766 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14353 |
| Salicaceae | Populus euphratica | 2 | populus_peu07306, populus_peu21299 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614727 |
| Solanaceae | Solanum chilense | 1 | SOLCI006296400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017961 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.683_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0014 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30870.v3.1 |