Basic Information
Locus ID:
Ag8G01886
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 248415155 | 248417563 | - | Ag8G01886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 75,096.40 Da | 34.37 | 78.55 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00053 | EGF | 256 | 294 | 1.03158E-5 | - |
| CDD | cd00028 | B_lectin | 43 | 148 | 1.77173E-16 | IPR001480 |
| Pfam | PF00069 | Protein kinase domain | 482 | 573 | 1.1E-15 | IPR000719 |
| Pfam | PF00954 | S-locus glycoprotein domain | 206 | 288 | 3.5E-9 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 80 | 158 | 1.5E-12 | IPR001480 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 453 | 643 | 4.72E-30 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 67 | 150 | 2.62E-14 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 563 | 654 | 7.9E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 457 | 558 | 4.1E-33 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 40 | 147 | 2.7E-11 | IPR036426 |
| SMART | SM00108 | blect_4 | 43 | 148 | 4.1E-4 | IPR001480 |
| SMART | SM00220 | serkin_6 | 478 | 643 | 1.6E-4 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 252 | 294 | 10.555761 | IPR000742 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 32 | 152 | 12.09541 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 478 | 664 | 14.633651 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 293 | 381 | 8.125277 | IPR003609 |
| ProSitePatterns | PS01186 | EGF-like domain signature 2. | 279 | 293 | - | IPR000742 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 484 | 506 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24080.2 | - | 0 |
| RefSeq | XP_017223698.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Daucus carota subsp. sativus] | 0 |
| Q9FLV4 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana OX=3702 GN=At5g24080 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YQ77 | Receptor-like serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.123838 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.271986 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.147534 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.056621 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.834537 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.83301 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.773436 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.632733 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.066603 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.090935 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.862724 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.464141 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.349834 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.008574 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.911135 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.542379 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.329054 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.58649 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.330264 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.897669 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.08153 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.267054 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.293405 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.330734 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.862754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.17444 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.092337 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.581795 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.959785 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.595838 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.416765 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.191218 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.30975 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.314335 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.93387 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.363669 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.548102 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.32964 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.682422 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.616199 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.910686 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 85.570488 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 90.263527 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.787991 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.909895 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 73.025993 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.295439 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.9635 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.477584 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.265858 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9689 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21983 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017416, Ah017420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg40241, Sbi_jg50225, Sbi_jg9751, Sbi_jg9752 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1825, Seu_jg18930, Seu_jg18931 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011401, GOSA_00011403 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41583, Sgl41620, Sgl46417, Sgl46466 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044682 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0001070, CQ.Regalona.r1.8AG0001080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218860 |
| Apiaceae | Apium graveolens | 1 | Ag8G01886 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G005500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722865 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1631.V1.1, AsparagusV1_07.2556.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G22868 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0786 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0853 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11122 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.Contig10.16, evm.TU.LG06.1395 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021557 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.3067, CH01.3292 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0118740, gene-QOZ80_2AG0118770 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339400.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029879, gene-QYE76_029890 |
| Poaceae | Oryza coarctata | 1 | Oco20G000060 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g01100.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G268700, gene-BS78_05G107500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502905 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G025370, Chr09G006670, Chr13G018130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G100400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG039990, gene_TRIDC4BG009190 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G255400.1.cds1, TraesCS4B02G059700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38221, nbis-gene-39372 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13025, Zma_g15792 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1305, evm.TU.LG18.1369, evm.TU.LG18.1370 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.268 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5684 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17583 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.76 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21315 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2682 |
| Salicaceae | Populus euphratica | 1 | populus_peu21238 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617218 |
| Solanaceae | Solanum chilense | 1 | SOLCI000977500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014829 |