Basic Information
Locus ID:
Ag8G01883
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
FKF1
Description:
Adagio protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 248292606 | 248295906 | - | Ag8G01883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 69,751.62 Da | 40.20 | 86.43 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 60 | 170 | 2.62614E-7 | IPR000014 |
| Pfam | PF13415 | Galactose oxidase, central domain | 379 | 424 | 3.7E-10 | - |
| Pfam | PF13426 | PAS domain | 63 | 171 | 3.4E-16 | IPR000014 |
| Pfam | PF13418 | Galactose oxidase, central domain | 314 | 364 | 3.7E-9 | - |
| Pfam | PF07646 | Kelch motif | 538 | 585 | 7.1E-5 | IPR011498 |
| Pfam | PF13415 | Galactose oxidase, central domain | 428 | 479 | 2.6E-7 | - |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 70 | 171 | 5.58E-19 | IPR035965 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 301 | 616 | 5.23E-38 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 214 | 272 | 3.11E-10 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 290 | 523 | 2.4E-40 | IPR015915 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 57 | 182 | 3.2E-42 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 524 | 627 | 5.4E-10 | IPR015915 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 70 | 170 | 3.2E-6 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 69 | 131 | 11.970475 | IPR000014 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68050.1 | flavin-binding, kelch repeat, f box 1. Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression. | 0 |
| RefSeq | XP_017222575.1 | PREDICTED: adagio protein 3 [Daucus carota subsp. sativus] | 0 |
| Q9C9W9 | Adagio protein 3 OS=Arabidopsis thaliana OX=3702 GN=ADO3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YQN0 | PAS domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026805 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.902109 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.787498 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.599048 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.152558 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.964265 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.405696 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.110185 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.136623 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.297431 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.422 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.62936 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.366305 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.023783 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.1697 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.032697 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.711368 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.521336 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.116086 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.672069 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.683257 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.379593 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.561608 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.286631 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.181195 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.669453 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.986483 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.216317 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.181133 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.255409 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.803653 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.220265 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.624815 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.117912 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.408566 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.282112 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.913245 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.638865 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 14.088772 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.574984 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.897904 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.041083 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 42.327938 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.853565 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 92.554832 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 48.263813 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 38.965229 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.853809 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.107014 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.117287 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.265972 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg15714, jg31460, jg33156, jg33157, jg4112, jg5124 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10806, gene_3726 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013334, Ah014762 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g154770, BVRB_8g198410 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25165, Sbi_jg43112, Sbi_jg45707, Sbi_jg9007 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11549, Seu_jg19583 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001926, GOSA_00007636 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl41241, Sgl42442, Sgl47171 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001898, gene:ENSEOMG00000002509 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0007340, CQ.Regalona.r1.6BG0007940 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218410 |
| Apiaceae | Apium graveolens | 3 | Ag6G02087, Ag8G01883, AgUnG00702 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G003740, COCNU_03G009890, COCNU_11G012840 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695941, gene-LOC103698624, gene-LOC120111270 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.57.V1.1, AsparagusV1_03.1576.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G03548, Ftri18G17748, Ftri7G21950 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G68050.1, AT2G18915.2, AT5G57360.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013003m.g.v1.0, Thhalv10018284m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g067910.2N, BniB03g067960.2N, BniB03g067980.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1119, Ceq09G0828 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1211, Cgl09G0870 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g07200, gene.Cymno11g08700 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g11570, gene.Thate04g24520, gene.Thate07g07220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2459 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1232, evm.TU.LG07.160 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017341, Pov_00027674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17095, Lb3G17104 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.1566, AH06.2815, BH04.1579, BH06.2609, BH07.494 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0101720, gene-QOZ80_2BG0155110 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0369880.1, HORVU.MOREX.r3.6HG0560010.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007521, gene-QYE76_020560, gene-QYE76_035848 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G002570, Oco04G002510, Oco11G015910, Oco12G016230 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g05700.2, LOC_Os06g47890.2, LOC_Os11g34460.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G039600, gene-BS78_05G164600 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202711, Pt_Chr0401164, Pt_Chr0405086, Pt_Chr0704529 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G032380, Chr06G034850, Chr07G016360, Chr10G021150 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel4E01G303100, Tel6E01G274600, Tel6E01G736800 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG025480, gene_TRIDC4BG027180 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS4A02G164000.1, TraesCS4B02G157500.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb113780_P002, Zm00001eb201580_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45742 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18952, Zma_g31051, Zma_g33309 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2716, evm.TU.LG03.302, evm.TU.LG12.1403 ... |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g20000, gene.Posoc01g24720, gene.Posoc03g14740 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.759, evm.TU.Scaffold_4_RagTag.2045 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13290, nbisL1-mrna-23467, nbisL1-mrna-25454 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19475, nbisL1-mrna-7833 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16694, nbisL1-mrna-20055, nbisL1-mrna-4810 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.1192, evm.TU.utg000013l.415 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000599, Maker00004325, Maker00014969 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10811, nbisL1-mrna-14262, nbisL1-mrna-16586 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14283, nbisL1-mrna-14662, nbisL1-mrna-20961 |
| Salicaceae | Populus euphratica | 5 | populus_peu05422, populus_peu07219, populus_peu12039 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603361, gene-LOC132625858 |
| Solanaceae | Solanum chilense | 2 | SOLCI005539600, SOLCI007287500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007452, gene-LOC107025998 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12691_chr02_+, STRG.8173_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3641, TC10G0832 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26740.v3.1 |