halophFGD

Basic Information

Locus ID: Ag8G01876

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Zinc finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	248161181	248165554	-	Ag8G01876

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.75	60,910.20 Da	41.82	65.02	-0.80

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00641	Zn-finger in Ran binding protein and others	291	315	1.2E-7	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	370	392	1.8E-5	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	335	359	3.5E-6	IPR001876
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	365	398	3.53E-5	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	288	317	1.02E-6	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	329	361	6.28E-6	IPR036443
Gene3D	G3DSA:4.10.1060.10	-	327	364	3.1E-10	-
Gene3D	G3DSA:4.10.1060.10	-	285	319	7.1E-14	-
Gene3D	G3DSA:4.10.1060.10	-	365	398	5.6E-9	-
SMART	SM00547	zf_4	370	394	2.1E-5	IPR001876
SMART	SM00547	zf_4	293	317	5.0E-8	IPR001876
SMART	SM00547	zf_4	337	361	2.3E-4	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	335	364	9.630757	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	291	320	9.834018	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	368	397	9.596881	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	295	314	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	372	391	-	IPR001876
MobiDBLite	mobidb-lite	consensus disorder prediction	251	270	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	251	284	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G70650.1	Ran BP2/NZF zinc finger-like superfamily protein.
RefSeq	XP_017220815.1	PREDICTED: zinc finger protein VAR3, chloroplastic-like [Daucus carota subsp. sativus]
TrEMBL	A0A175YRB3	Zinc finger protein VAR3, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026798 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.01575	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.974709	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.48147	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.762301	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.898342	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.893692	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.917135	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.526148	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.308882	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.160013	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.389823	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.874686	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.946883	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.988966	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.487212	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.890315	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.352073	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.504977	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.881856	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.48986	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.018881	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.150172	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.980968	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.884228	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.003804	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.737149	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.543221	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.183705	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.940242	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.38335		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.19416		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.410844		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.490775		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.702484		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.257081		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.50363		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.259968		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.348188		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.547518	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.186424	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.96735	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.319983	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.314368	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.951246	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.887961	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.293935	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.536805	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.123655	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.13557	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg18508, jg26572, jg7362
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10467, gene_19906
Amaranthaceae	Atriplex hortensis	2	Ah002107, Ah005787
Amaranthaceae	Beta vulgaris	2	BVRB_4g081330, BVRB_5g110990
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17078, Sbi_jg32026, Sbi_jg57319, Sbi_jg61629
Amaranthaceae	Salicornia europaea	1	Seu_jg25047
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008397, GOSA_00019259
Amaranthaceae	Suaeda glauca	4	Sgl24535, Sgl29700, Sgl53851, Sgl59114
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005102, gene:ENSEOMG00000023265 ... gene:ENSEOMG00000026795, gene:ENSEOMG00000028965, gene:ENSEOMG00000039962
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0008530, CQ.Regalona.r1.5AG0015630 ... CQ.Regalona.r1.5BG0016800
Anacardiaceae	Pistacia vera	4	pistato.v30084090, pistato.v30127270, pistato.v30149750 ... pistato.v30218140
Apiaceae	Apium graveolens	3	Ag3G01992, Ag7G01610, Ag8G01876
Arecaceae	Cocos nucifera	3	COCNU_03G009990, COCNU_03G010040, COCNU_12G001970
Arecaceae	Phoenix dactylifera	3	gene-LOC103697650, gene-LOC103697653, gene-LOC103724379
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.969.V1.1, AsparagusV1_03.1559.V1.1 ... AsparagusV1_08.3105.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G27548, Ftri15G22692, Ftri8G01563
Brassicaceae	Arabidopsis thaliana	3	AT1G48570.1, AT1G55040.1, AT1G70650.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10011523m.g.v1.0, Thhalv10019608m.g.v1.0 ... Thhalv10023272m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g35510.v2.2, SpUn0004_0260.v2.2
Brassicaceae	Brassica nigra	3	BniB03g048490.2N, BniB04g018590.2N, BniB04g062250.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2825, Ceq06G1198, Ceq09G0846
Casuarinaceae	Casuarina glauca	3	Cgl03G2979, Cgl06G1252, Cgl09G0915
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g04750, gene.Cymno11g03380, gene.Cymno13g02570
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g27060, gene.Thate05g18990, gene.Thate05g23570
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7777, nbisL1-mrna-7778
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1253, evm.TU.LG03.2444, evm.TU.LG10.66
Plantaginaceae	Plantago ovata	3	Pov_00007269, Pov_00017210, Pov_00018589
Plumbaginaceae	Limonium bicolor	3	Lb3G16589, Lb6G29930, Lb8G36144
Poaceae	Echinochloa crus-galli	10	AH01.845, AH01.870, AH01.871, AH03.887, BH01.1013, BH01.988 ... BH03.1014, CH01.1034, CH01.1062, CH03.1175
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219350, gene-QOZ80_3BG0264620 ... gene-QOZ80_7AG0563990, gene-QOZ80_7BG0597280
Poaceae	Lolium multiflorum	3	gene-QYE76_026028, gene-QYE76_062435, gene-QYE76_062848
Poaceae	Oryza coarctata	7	Oco05G021460, Oco05G021700, Oco06G022260, Oco06G022470 ... Oco13G006110, Oco14G006580, Oco18G000710
Poaceae	Oryza sativa	3	LOC_Os03g50120.1, LOC_Os03g50430.1, LOC_Os07g22024.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G106500, gene-BS78_01G108600 ... gene-BS78_02G081200
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105035, Pt_Chr0206277, Pt_Chr0206292, Pt_Chr0502644
Poaceae	Sporobolus alterniflorus	9	Chr01G007230, Chr04G026810, Chr04G027010, Chr07G025820 ... Chr12G030250, Chr19G015250, Chr24G006040, Chr27G000270, Chr28G005510
Poaceae	Thinopyrum elongatum	4	Tel4E01G080000, Tel4E01G083000, Tel6E01G639600 ... Tel7E01G647100
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG041760, gene_TRIDC4AG042040 ... gene_TRIDC4BG006930, gene_TRIDC4BG007290, gene_TRIDC6AG053860
Poaceae	Triticum aestivum	10	TraesCS4A02G267600.1, TraesCS4A02G269900.1 ... TraesCS4B02G044200.1, TraesCS4B02G046800.1, TraesCS4D02G041700.1, TraesCS4D02G046600.1, TraesCS6A02G359500.1, TraesCS6B02G392400.1, TraesCS6D02G103100.1, TraesCS6D02G342400.1
Poaceae	Zea mays	3	Zm00001eb094690_P002, Zm00001eb216320_P001 ... Zm00001eb216480_P002
Poaceae	Zoysia japonica	4	nbis-gene-14801, nbis-gene-14802, nbis-gene-15920 ... nbis-gene-38866
Poaceae	Zoysia macrostachya	3	Zma_g2955, Zma_g6296, Zma_g659
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1024, evm.TU.LG08.659, evm.TU.LG22.1255 ... evm.TU.LG23.41
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g10140, gene.Posoc03g13770, gene.Posoc04g06360 ... gene.Posoc10g05280
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.60387.1, evm.TU.60388.1 ... evm.TU.Scaffold_11_RagTag.740, evm.TU.Scaffold_17_RagTag.771, evm.TU.Scaffold_2_RagTag.2048
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14411, nbisL1-mrna-23477, nbisL1-mrna-2757 ... nbisL1-mrna-2820
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1125, nbisL1-mrna-11782, nbisL1-mrna-12587
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12351, nbisL1-mrna-13689, nbisL1-mrna-20045
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.62, evm.TU.utg000013l.424 ... evm.TU.utg000061l.25
Rhizophoraceae	Kandelia obovata	3	Maker00004422, Maker00005159, Maker00009092
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10819, nbisL1-mrna-12978, nbisL1-mrna-927
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14268, nbisL1-mrna-16161
Salicaceae	Populus euphratica	3	populus_peu13412, populus_peu28255, populus_peu29707
Solanaceae	Lycium barbarum	2	gene-LOC132609147, gene-LOC132633197
Solanaceae	Solanum chilense	3	SOLCI000273200, SOLCI000665200, SOLCI006610100
Solanaceae	Solanum pennellii	2	gene-LOC107014296, gene-LOC107026902
Tamaricaceae	Reaumuria soongarica	3	gene_10199, gene_12408, gene_8930
Tamaricaceae	Tamarix chinensis	3	TC04G0097, TC10G2609, TC12G2018
Zosteraceae	Zostera marina	3	Zosma03g20430.v3.1, Zosma03g23750.v3.1, Zosma06g07010.v3.1