halophFGD

Basic Information

Locus ID: Ag8G01866

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	247815523	247818876	+	Ag8G01866

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.53	32,210.90 Da	46.12	67.86	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	40	111	2.0E-14	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	40	115	5.05E-19	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	3	98	2.1E-27	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	99	196	5.8E-7	-
SMART	SM00219	tyrkin_6	27	184	5.4E-6	IPR020635
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	295	8.923514	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	192	295	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	207	286	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G70740.1	Protein kinase superfamily protein.
RefSeq	XP_017220734.1	PREDICTED: cysteine-rich receptor-like protein kinase 10 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9CAC3	Cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana OX=3702 GN=CRK43 PE=2 SV=2
TrEMBL	A0A166EF47	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007315 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.838196	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.934124	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.743095	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.483165	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.730468	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.16128	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.779435	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.769907	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.425057	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.820864	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.842222	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.68041	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.69294	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.627281	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.87339	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.695208	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.205063	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.089903	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.340751	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.678215	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.760927	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.439229	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.876495	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.367017	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	3.254075	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.076631	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.417472	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.811683	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.054771		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.50698		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.210395		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.163932		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.123774		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.319907		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.863524		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.085114		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.105062		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.3466	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.207255	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.148668	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	11.733031	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	13.73483	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.844991	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.587287	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.312407	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.604715	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.100842	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.947621	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.545096	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia europaea	1	Seu_jg1588
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023813
Amaranthaceae	Suaeda glauca	2	Sgl25444, Sgl25455
Apiaceae	Apium graveolens	1	Ag8G01866
Solanaceae	Lycium barbarum	1	gene-LOC132629060