halophFGD

Basic Information

Locus ID: Ag8G01826

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CIPK17

Description: CBL-interacting protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	246176347	246180709	-	Ag8G01826

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.08	30,496.56 Da	30.81	86.07	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12195	CIPK_C	159	250	3.76723E-24	-
Pfam	PF03822	NAF domain	165	194	8.3E-6	IPR004041
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	16	92	3.42E-14	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	90	141	4.43E-8	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	10	63	1.2E-12	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	64	142	2.1E-8	-
Gene3D	G3DSA:3.30.310.80	Kinase associated domain 1, KA1	143	255	1.9E-25	-
SMART	SM00220	serkin_6	22	133	2.3E-5	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	22	267	10.054235	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	28	51	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0007165 (signal transduction)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K07198 (5'-AMP-activated protein kinase, catalytic alpha subunit [EC:2.7.11.31])

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04211 (Longevity regulating pathway) map04211 (Longevity regulating pathway) ko04213 (Longevity regulating pathway - multiple species) map04213 (Longevity regulating pathway - multiple species) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) ko04710 (Circadian rhythm)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G17510.1	CBL-interacting protein kinase 1. Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.
RefSeq	XP_017219950.1	PREDICTED: CBL-interacting serine/threonine-protein kinase 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8RWC9	CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CIPK1 PE=1 SV=2
TrEMBL	A0A175YQL3	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026941 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	42.435707	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	21.732954	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	30.116003	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	34.515453	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	31.991415	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	23.908014	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	20.029192	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.384095	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	30.049238	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	30.39226	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	32.970516	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	20.554518	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	23.497232	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.621525	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	18.567627	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	14.125797	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	27.029345	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	26.54232	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	18.695114	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	19.101284	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	28.49118	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.177459	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.003156	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.064078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.959953	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	46.835423	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	25.847811	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	39.48312	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	57.270271	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	57.959507		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	38.142242		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	30.8451		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	63.367229		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	41.893475		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	73.642075		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	41.083344		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	39.849117		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	32.325348		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	36.905235	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	56.740078	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	55.339054	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.448257	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.419472	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.989438	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.57055	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.100286	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.066406	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.422032	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	28.828365	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	24.056446	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag5G01794, Ag7G01958, Ag8G01826
Arecaceae	Cocos nucifera	1	contig68889702G000010
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.1091.V1.1, AsparagusV1_07.1152.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g15840
Poaceae	Sporobolus alterniflorus	1	Chr22G015600
Salicaceae	Populus euphratica	1	populus_peu12105