halophFGD

Basic Information

Locus ID: Ag8G01814

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: DEAD-box ATP-dependent RNA helicase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	243854712	243861958	-	Ag8G01814

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.96	127,246.41 Da	55.10	54.17	-0.83

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00268	DEADc	482	676	3.00687E-97	-
CDD	cd00201	WW	23	51	5.94225E-4	IPR001202
CDD	cd18787	SF2_C_DEAD	690	819	7.778E-62	-
Pfam	PF00270	DEAD/DEAH box helicase	495	665	1.7E-48	IPR011545
Pfam	PF00271	Helicase conserved C-terminal domain	702	810	5.2E-33	IPR001650
Pfam	PF00397	WW domain	22	52	9.3E-8	IPR001202
SUPERFAMILY	SSF51045	WW domain	15	53	6.68E-8	IPR036020
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	542	826	2.19E-75	IPR027417
Gene3D	G3DSA:3.40.50.300	-	681	851	1.2E-57	IPR027417
Gene3D	G3DSA:3.40.50.300	-	445	680	1.9E-85	IPR027417
Gene3D	G3DSA:2.20.70.10	-	16	54	6.7E-6	-
SMART	SM00456	ww_5	21	54	2.1E-8	IPR001202
SMART	SM00490	helicmild6	726	810	6.6E-33	IPR001650
SMART	SM00487	ultradead3	490	693	7.5E-63	IPR014001
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	502	676	31.087744	IPR014001
ProSiteProfiles	PS51195	DEAD-box RNA helicase Q motif profile.	471	499	11.200635	IPR014014
ProSiteProfiles	PS50020	WW/rsp5/WWP domain profile.	20	54	11.7824	IPR001202
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	705	849	25.745892	IPR001650
ProSitePatterns	PS01159	WW/rsp5/WWP domain signature.	26	52	-	IPR001202
ProSitePatterns	PS00039	DEAD-box subfamily ATP-dependent helicases signature.	622	630	-	IPR000629
MobiDBLite	mobidb-lite	consensus disorder prediction	974	1164	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	212	231	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1067	1095	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	925	944	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	109	142	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1120	1164	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	999	1029	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	249	281	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1039	1057	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	869	899	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003724 (RNA helicase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K12823 (ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7])

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06480.1	DEAD box RNA helicase family protein.
RefSeq	XP_017222588.1	PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SQV1	DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1
TrEMBL	A0A175YQW4	DEAD-box ATP-dependent RNA helicase 40 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026958 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	19.344509	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.502213	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	16.074043	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	16.414455	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.91702	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	16.667786	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	15.058677	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	15.047903	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	63.882698	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	64.387756	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	63.764046	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	68.650208	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	63.681633	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	54.459114	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.812596	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.107187	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	15.743336	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.985886	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.52739	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	23.708307	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	24.954378	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.937155	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	25.154026	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	26.590414	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	23.355949	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	28.716064	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	25.603069	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	24.296444	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	25.991409	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.374641		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	14.522974		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.297782		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	29.843386		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	23.593798		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	27.430344		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	18.342136		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.156808		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	11.967044		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	34.91737	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	15.704602	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.618793	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	27.388765	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	26.031025	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	42.86908	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	35.518906	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	23.332684	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	30.961578	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	27.53385	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	27.147688	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	23.375298	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17783, jg25242, jg28141, jg30472
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15660, gene_9657
Amaranthaceae	Atriplex hortensis	2	Ah006988, Ah019962
Amaranthaceae	Beta vulgaris	1	BVRB_3g059690
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19152, Sbi_jg37572, Sbi_jg38186, Sbi_jg6317
Amaranthaceae	Salicornia europaea	1	Seu_jg5415
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003645, GOSA_00024097
Amaranthaceae	Suaeda glauca	4	Sgl01602, Sgl06767, Sgl25149, Sgl30306
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000008730, gene:ENSEOMG00000014449 ... gene:ENSEOMG00000027441, gene:ENSEOMG00000028728, gene:ENSEOMG00000029868, gene:ENSEOMG00000043082, gene:ENSEOMG00000044111
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0012760, CQ.Regalona.r1.3BG0012840 ... CQ.Regalona.r1.4AG0012060, CQ.Regalona.r1.4BG0014130, CQ.Regalona.r1.6BG0013600
Anacardiaceae	Pistacia vera	2	pistato.v30022650, pistato.v30232460
Apiaceae	Apium graveolens	4	Ag3G00863, Ag4G00762, Ag8G01814, Ag9G00469
Arecaceae	Cocos nucifera	5	COCNU_01G000190, COCNU_06G008480, COCNU_12G000320 ... COCNU_13G000250, COCNU_14G005640
Arecaceae	Phoenix dactylifera	8	gene-LOC103696445, gene-LOC103697068, gene-LOC103699024 ... gene-LOC103700537, gene-LOC103708171, gene-LOC103709291, gene-LOC120103868, gene-LOC120107480
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.2606.V1.1, AsparagusV1_Unassigned.981.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G00143, Ftri17G31092, Ftri18G01135, Ftri18G10066
Brassicaceae	Arabidopsis thaliana	3	AT3G01540.2, AT3G06480.1, AT5G14610.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10012853m.g.v1.0, Thhalv10019956m.g.v1.0 ... Thhalv10020294m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g00510.v2.2, Sp3g05420.v2.2, Sp6g29420.v2.2
Brassicaceae	Brassica nigra	4	BniB03g024570.2N, BniB05g023920.2N, BniB07g035150.2N ... BniB07g061920.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1848, Ceq09G1405
Casuarinaceae	Casuarina glauca	2	Cgl02G1928, Cgl09G1497
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g14540, gene.Cymno05g06030
Dunaliellaceae	Dunaliella salina	3	Dusal.0159s00016.v1.0, Dusal.0313s00016.v1.0 ... Dusal.0466s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g16740, gene.Thate03g22960, gene.Thate07g15880 ... gene.Thate07g20340, gene.Thate08g09890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10321, nbisL1-mrna-10828, nbisL1-mrna-5121
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.347, evm.TU.LG11.1127
Plantaginaceae	Plantago ovata	2	Pov_00022541, Pov_00023282
Plumbaginaceae	Limonium bicolor	6	Lb0G38389, Lb1G01074, Lb3G21004, Lb4G23074, Lb4G23091 ... Lb6G31402
Poaceae	Echinochloa crus-galli	8	AH02.2020, AH02.491, BH02.2063, BH02.509, BH04.2247 ... CH02.2238, CH02.554, CH04.2668
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0011430, gene-QOZ80_1AG0020850 ... gene-QOZ80_1BG0060060, gene-QOZ80_1BG0070640, gene-QOZ80_9AG0692600, gene-QOZ80_9BG0718670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0235240.1, HORVU.MOREX.r3.3HG0241770.1 ... HORVU.MOREX.r3.3HG0263860.2
Poaceae	Lolium multiflorum	4	gene-QYE76_049862, gene-QYE76_050047, gene-QYE76_050641 ... gene-QYE76_050642
Poaceae	Oryza coarctata	6	Oco01G002920, Oco01G012350, Oco02G002950, Oco02G012490 ... Oco21G009940, Oco22G011230
Poaceae	Paspalum vaginatum	3	gene-BS78_03G048300, gene-BS78_03G161600 ... gene-BS78_10G033300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0200386, Pt_Chr0205346, Pt_Chr0205422, Pt_Chr0207382 ... Pt_Chr0602973
Poaceae	Sporobolus alterniflorus	11	Chr02G017740, Chr02G019670, Chr03G005120, Chr03G008880 ... Chr05G010680, Chr05G016270, Chr07G013810, Chr07G013820, Chr08G005570, Chr08G009630, Chr31G008570
Poaceae	Thinopyrum elongatum	4	Tel3E01G174600, Tel3E01G220000, Tel3E01G350700 ... Tel6E01G262700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG012140, gene_TRIDC3AG016280 ... gene_TRIDC3AG027580, gene_TRIDC3BG016350, gene_TRIDC3BG021180, gene_TRIDC3BG034140
Poaceae	Triticum aestivum	9	TraesCS3A02G100200.1, TraesCS3A02G130200.4 ... TraesCS3A02G194200.1, TraesCS3B02G117000.1, TraesCS3B02G149300.8, TraesCS3B02G230800.1, TraesCS3D02G100900.1, TraesCS3D02G131100.11, TraesCS3D02G202500.3
Poaceae	Zea mays	6	Zm00001eb116020_P003, Zm00001eb122880_P005 ... Zm00001eb162370_P006, Zm00001eb164820_P006, Zm00001eb336740_P003, Zm00001eb356610_P001
Poaceae	Zoysia japonica	4	nbis-gene-13146, nbis-gene-13358, nbis-gene-21446 ... nbis-gene-47334
Poaceae	Zoysia macrostachya	4	Zma_g10458, Zma_g19150, Zma_g7691, Zma_g8056
Portulacaceae	Portulaca oleracea	5	evm.TU.LG08.1532, evm.TU.LG13.1077, evm.TU.LG16.1487 ... evm.TU.LG22.424, evm.TU.LG26.179
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13160, gene.Posoc04g21230
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.1912, evm.TU.Scaffold_3_RagTag.696 ... evm.TU.Scaffold_3_RagTag.697
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1272, nbisL1-mrna-2387, nbisL1-mrna-2585
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18471, nbisL1-mrna-6763
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3081, nbisL1-mrna-6378
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000019l.70, evm.TU.utg000019l.795
Rhizophoraceae	Kandelia obovata	2	Maker00002328, Maker00012931
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12042, nbisL1-mrna-5258
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13130
Salicaceae	Populus euphratica	5	populus_peu01062, populus_peu20741, populus_peu24415 ... populus_peu24416, populus_peu25681
Solanaceae	Lycium barbarum	3	gene-LOC132616981, gene-LOC132621482, gene-LOC132626705
Solanaceae	Solanum chilense	3	SOLCI000100200, SOLCI000775400, SOLCI001041500
Solanaceae	Solanum pennellii	3	gene-LOC107004850, gene-LOC107007111, gene-LOC107011069
Tamaricaceae	Reaumuria soongarica	3	STRG.23246_chr05_+, gene_1240, gene_937
Tamaricaceae	Tamarix chinensis	3	TC01G3600, TC03G0968, TC12G1724
Zosteraceae	Zostera marina	2	Zosma01g32110.v3.1, Zosma01g37020.v3.1