Basic Information
Locus ID:
Ag8G01774
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBC32
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 241345450 | 241348076 | + | Ag8G01774 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 34,147.18 Da | 47.18 | 73.21 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 13 | 121 | 4.40043E-44 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 15 | 122 | 2.1E-20 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 12 | 125 | 2.55E-37 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 184 | 2.5E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 14 | 174 | 7.8E-28 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 11 | 166 | 37.715694 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 195 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17000.1 | ubiquitin-conjugating enzyme 32. | 0 |
| RefSeq | XP_017220506.1 | PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Daucus carota subsp. sativus] | 0 |
| Q9LSP7 | Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana OX=3702 GN=UBC32 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YQF3 | UBC core domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 50.560474 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 62.803829 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 53.119255 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 56.705879 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 56.529373 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 45.837811 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 44.195911 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 42.438953 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.795963 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 38.294289 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.86874 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.703209 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.91412 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.989899 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 36.682358 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 37.291592 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 25.943493 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 45.796391 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 36.605419 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 73.371727 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 84.059509 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 30.545864 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 31.537977 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.22813 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.329428 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.805595 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.75523 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 32.64032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 32.484806 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.452288 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.82658 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 23.260048 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 41.252609 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.584282 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 51.869656 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 34.414471 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 27.109936 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 27.756983 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.442762 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 42.951847 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 30.941301 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 118.213699 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 95.982521 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 40.497623 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.166489 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 118.531723 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 44.890919 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 38.085751 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.181093 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.991425 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11268, jg28102, jg5639 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2956 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019088 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g053960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38023, Sbi_jg6166 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15680 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006209 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00721, Sgl00844, Sgl05743 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001164, gene:ENSEOMG00000031601 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0001410, CQ.Regalona.r1.3BG0001460 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30148730, pistato.v30148760, pistato.v30233240 |
| Apiaceae | Apium graveolens | 2 | Ag1G02002, Ag8G01774 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004520 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103723397, gene-LOC120108985, gene-LOC120112886 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.170.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA13379 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G17000.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10021196m.g.v1.0, Thhalv10025677m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g15220.v2.2, Sp7g14760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g020130.2N, BniB07g052950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1052 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1142 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g02460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0023s00034.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g09730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1204 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026031 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01705, Lb1G03018 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3874, BH01.4212, CH01.4499 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0245670, gene-QOZ80_3BG0282470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0382110.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068466 |
| Poaceae | Oryza coarctata | 2 | Oco05G011600, Oco06G014800 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g19500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G377300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102573, Pt_Chr0102574 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032930, Chr04G009590, Chr07G002140, Chr12G006650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G329200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG017080, gene_TRIDC4BG031710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G121400.1, TraesCS4B02G181500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb014740_P001, Zm00001eb396060_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1840, nbis-gene-3514 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1370, Zma_g3767 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1341 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g07210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.650, evm.TU.Scaffold_6_RagTag.1181 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1324, nbisL1-mrna-16162 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13253, nbisL1-mrna-18442 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1016 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.754, evm.TU.utg000019l.824 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008119, Maker00012737 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13548, nbisL1-mrna-5290 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13086, nbisL1-mrna-4071 |
| Salicaceae | Populus euphratica | 2 | populus_peu06905, populus_peu20841 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604501 |
| Solanaceae | Solanum chilense | 1 | SOLCI001643200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007634 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6892_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2077 |
| Zosteraceae | Zostera marina | 1 | Zosma06g21720.v3.1 |