halophFGD

Basic Information

Locus ID: Ag8G01739

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	238776362	238783430	+	Ag8G01739

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.83	65,433.80 Da	37.60	89.43	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	190	217	0.022	IPR001680
Pfam	PF04003	Dip2/Utp12 Family	463	553	5.2E-9	IPR007148
SUPERFAMILY	SSF50978	WD40 repeat-like	12	279	2.38E-33	IPR036322
Gene3D	G3DSA:2.130.10.10	-	144	266	2.2E-16	IPR015943
Gene3D	G3DSA:2.130.10.10	-	5	143	6.8E-12	IPR015943
SMART	SM00320	WD40_4	187	227	0.012	IPR001680
SMART	SM00320	WD40_4	2	33	100.0	IPR001680
SMART	SM00320	WD40_4	104	144	1.0	IPR001680
SMART	SM00320	WD40_4	147	184	0.0024	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	573	601	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	562	601	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14546 (U3 small nucleolar RNA-associated protein 5)

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G11240.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_017223669.1	PREDICTED: WD repeat-containing protein 43 [Daucus carota subsp. sativus]
TrEMBL	A0A175YQB4	Utp12 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027041 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.772829	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.6182	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.21964	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.269742	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.132337	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	17.523617	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.797095	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.916464	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.987057	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	23.365545	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	27.564022	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	26.749359	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	23.613359	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.789722	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.785498	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.166823	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.335409	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.879602	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.721589	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.346886	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.147567	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.323245	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.111203	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	10.486788	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.435005	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	7.877706	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.452848	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.123762	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.604342	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.898782		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.168283		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.306128		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	9.029279		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.471602		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.690527		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.628336		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.647555		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.179282		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.302345	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.560624	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.769892	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	6.313346	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.183155	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	26.52359	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.068834	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.409409	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.265689	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	23.745405	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	20.022772	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	24.97154	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg1246, jg28071, jg5801
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2988
Amaranthaceae	Atriplex hortensis	1	Ah019153
Amaranthaceae	Beta vulgaris	1	BVRB_3g048120
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg37969, Sbi_jg6104
Amaranthaceae	Salicornia europaea	1	Seu_jg15735
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006173
Amaranthaceae	Suaeda glauca	3	Sgl00894, Sgl05848, Sgl05971
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000002467, gene:ENSEOMG00000003655 ... gene:ENSEOMG00000030888
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0001010, CQ.Regalona.r1.3BG0001070
Anacardiaceae	Pistacia vera	1	pistato.v30233840
Apiaceae	Apium graveolens	1	Ag8G01739
Arecaceae	Cocos nucifera	1	COCNU_16G003880
Arecaceae	Phoenix dactylifera	2	gene-LOC103711445, gene-LOC120103686
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.135.V1.1
Asteraceae	Flaveria trinervia	1	Ftri14G19727
Brassicaceae	Arabidopsis thaliana	1	AT5G11240.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10012983m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g32320.v2.2
Brassicaceae	Brassica nigra	2	BniB02g050840.2N, BniB05g026180.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G1094
Casuarinaceae	Casuarina glauca	1	Cgl09G1191
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno15g02560
Dunaliellaceae	Dunaliella salina	1	Dusal.0093s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g31600
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5458
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG11.1246
Plantaginaceae	Plantago ovata	2	Pov_00021743, Pov_00026073
Plumbaginaceae	Limonium bicolor	2	Lb1G03039, Lb1G03061
Poaceae	Echinochloa crus-galli	4	AH01.3934, BH01.4281, BH01.4292, CH01.4564
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0244940, gene-QOZ80_3BG0283130
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0383540.1
Poaceae	Lolium multiflorum	2	gene-QYE76_068577, gene-QYE76_068605
Poaceae	Oryza coarctata	2	Oco05G011130, Oco06G011360
Poaceae	Oryza sativa	1	LOC_Os03g18840.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G384000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0102508, Pt_Chr0102535
Poaceae	Sporobolus alterniflorus	2	Chr01G032460, Chr12G007120
Poaceae	Thinopyrum elongatum	1	Tel4E01G337100
Poaceae	Triticum dicoccoides	3	gene_TRIDC1BG016820, gene_TRIDC4AG016060 ... gene_TRIDC4BG032790
Poaceae	Triticum aestivum	5	TraesCS1B02G115500.1, TraesCS2D02G317700.1 ... TraesCS4A02G116300.2, TraesCS4B02G187900.1, TraesCS4D02G189300.1
Poaceae	Zea mays	1	Zm00001eb013980_P001
Poaceae	Zoysia japonica	1	nbis-gene-1906
Poaceae	Zoysia macrostachya	1	Zma_g1409
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.1177, evm.TU.LG21.809
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g16050
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_3_RagTag.618
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-1351
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2115
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-6319
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000019l.841
Rhizophoraceae	Kandelia obovata	1	Maker00012566
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-12179
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-18212
Salicaceae	Populus euphratica	2	populus_peu22307, populus_peu22372
Solanaceae	Lycium barbarum	2	gene-LOC132626666, gene-LOC132631616
Solanaceae	Solanum chilense	1	SOLCI004583200
Solanaceae	Solanum pennellii	1	gene-LOC107011718
Tamaricaceae	Reaumuria soongarica	1	gene_12671
Tamaricaceae	Tamarix chinensis	1	TC06G1449
Zosteraceae	Zostera marina	6	Zosma02g06630.v3.1, Zosma02g06650.v3.1, Zosma02g06660.v3.1 ... Zosma02g06680.v3.1, Zosma02g06690.v3.1, Zosma469g00010.v3.1