Basic Information
Locus ID:
Ag8G01715
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 235264490 | 235275581 | + | Ag8G01715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 95,749.24 Da | 48.55 | 77.46 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 44 | 148 | 2.6E-15 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 44 | 148 | 1.14E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 19 | 183 | 6.2E-26 | IPR011333 |
| SMART | SM00225 | BTB_4 | 50 | 150 | 7.5E-16 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 50 | 120 | 13.012023 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15840.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_017223297.1 | PREDICTED: uncharacterized protein LOC108199819 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YPH0 | BTB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027073 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 26.115355 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.804129 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.757593 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.478491 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.972059 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.792822 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.272429 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.300945 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 39.277058 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 36.662735 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 40.079666 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 41.092278 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.05999 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.207733 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.639118 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.596497 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.162316 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.118671 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.486793 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.776543 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.622194 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.870068 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.380215 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.206415 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.199465 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.106417 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.7551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.955854 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.402245 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.621636 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.168585 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.813016 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.631199 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.528158 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.244819 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.017529 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.421492 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.433348 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.125154 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.234952 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.742767 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.964209 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.825537 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.312506 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.950991 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.57461 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.654318 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.715164 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.245636 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.031963 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12422 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18787 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020901 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59911, Sbi_jg62840 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24002 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021862 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03396, Sgl08517, Sgl08520 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012538, gene:ENSEOMG00000031524 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0016080, CQ.Regalona.r1.3BG0016370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234400 |
| Apiaceae | Apium graveolens | 1 | Ag8G01715 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G009970 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715285 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.931.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G28345 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024402m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g14240.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g016590.2N, BniB02g073690.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0911, Ceq09G1149 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1031, Cgl09G1238 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g14400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g03840 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1304 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019218 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34002 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4419, BH02.4459, CH02.4508 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0045550, gene-QOZ80_1BG0095580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0313410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057646 |
| Poaceae | Oryza coarctata | 2 | Oco01G029250, Oco02G030430 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G393300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600698 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G001810, Chr05G032730 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G472900, Tel3E01G714200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG063790, gene_TRIDC3BG071660 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G451000.1, TraesCS3B02G488400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb142310_P001, Zm00001eb363540_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10896, nbis-gene-10897 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9328 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG16.1503, evm.TU.LG26.161, evm.TU.LG26.162 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.581 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1385, nbisL1-mrna-21757 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6293 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.863 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012942 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12200 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18184 |
| Salicaceae | Populus euphratica | 2 | populus_peu19227, populus_peu22211 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645053 |
| Solanaceae | Solanum chilense | 1 | SOLCI002689900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008313 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7229 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1042 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22430.v3.1 |