Basic Information
Locus ID:
Ag8G01695
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LEC14B homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 231869897 | 231876582 | - | Ag8G01695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 52,248.64 Da | 48.93 | 77.38 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 370 | 411 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 281 | 0.072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 329 | 0.008 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 453 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 109 | 453 | 2.45E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 366 | 464 | 2.9E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 91 | 203 | 4.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 362 | 4.2E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 290 | 329 | 0.0028 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 176 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 411 | 0.21 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 283 | 0.0047 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 240 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 131 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 453 | 6.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 462 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 453 | 8.834696 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 297 | 331 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 297 | 338 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 215 | 249 | 9.104886 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017223659.1 | PREDICTED: LEC14B homolog isoform X2 [Daucus carota subsp. sativus] | 0 |
| O24467 | LEC14B homolog OS=Prunus armeniaca OX=36596 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YQ29 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.240656 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.60717 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.635859 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.768341 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.090099 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.178711 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.128988 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.122667 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.442202 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.414246 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.281139 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.691439 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.321589 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.044025 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.430116 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.692394 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.544857 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.383025 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.826297 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.129332 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.369606 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.195414 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.303668 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.197892 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.292335 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.641865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.581697 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.401715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.800976 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.458317 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.931156 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 25.912827 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 48.69725 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.024004 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 38.780327 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.42161 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.532711 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 20.469217 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.444647 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 37.522415 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 29.524267 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.956312 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.835805 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.321796 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.702322 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.894377 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.320336 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.344639 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.292858 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.972234 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27965, jg8840 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4240 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020659, Ah029679 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g165700 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg16358, Sbi_jg35803, Sbi_jg51804, Sbi_jg829 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13358, Seu_jg3896 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019786 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72037, Sgl75604 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006827, gene:ENSEOMG00000012738 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0016640, CQ.Regalona.r1.3BG0016510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30011350, pistato.v30238220 |
| Apiaceae | Apium graveolens | 5 | Ag10G00772, Ag2G02426, Ag5G02458, Ag8G01695, Ag9G01820 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002780, scaffold006566G000150 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721036, gene-LOC103724227 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2023.V1.1, AsparagusV1_07.935.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G03224, Ftri3G19980, Ftri9G25668 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03060.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g039150.2N, BniB08g045690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1641 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1701 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0973s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6289, nbisL1-mrna-9649 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.239, evm.TU.LG11.1392, evm.TU.LG11.995 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024805 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36260 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.2503, AH05.775, BH02.1792, BH05.1002, BH05.2585 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0017480, gene-QOZ80_1BG0066380 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0014190.1, HORVU.MOREX.r3.1HG0019410.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009485, gene-QYE76_013335 |
| Poaceae | Oryza coarctata | 5 | Oco01G010620, Oco02G011360, Oco09G009060, Oco10G002120 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g28680.1, LOC_Os05g05210.1, LOC_Os05g33710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G040800, gene-BS78_09G141300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0500549, Pt_Chr0505205, Pt_Chr0506203 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G008020, Chr13G016820, Chr18G001260, Chr18G009000 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G134700, Tel1E01G170400, Tel1E01G422800 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG008920, gene_TRIDC1AG012340 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G065300.2, TraesCS1A02G086800.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb349670_P002, Zm00001eb354420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18207, nbis-gene-52838 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g26411, Zma_g26852, Zma_g27685 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.2022, evm.TU.LG03.761, evm.TU.LG12.968 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.521, evm.TU.Scaffold_9_RagTag.875 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1442, nbisL1-mrna-21349 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19926, nbisL1-mrna-21386 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18431, nbisL1-mrna-6245 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.546, evm.TU.utg000019l.900 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009533, Maker00012425 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1530, nbisL1-mrna-6297 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2052, nbisL1-mrna-5182 |
| Salicaceae | Populus euphratica | 4 | populus_peu07816, populus_peu22033, populus_peu22037 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605607, gene-LOC132645046 |
| Solanaceae | Solanum chilense | 2 | SOLCI001973800, SOLCI002921100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008401, gene-LOC107022037 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8484 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1524 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20360.v3.1 |