Basic Information
Locus ID:
Ag8G01627
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
phospholipase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 223763379 | 223779184 | + | Ag8G01627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 116,897.76 Da | 58.81 | 75.35 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02862 | DDHD domain | 934 | 976 | 4.9E-9 | IPR004177 |
| Pfam | PF02862 | DDHD domain | 780 | 916 | 1.7E-30 | IPR004177 |
| SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 411 | 460 | 4.52E-6 | IPR029058 |
| SMART | SM01127 | DDHD_2a | 780 | 977 | 4.3E-57 | IPR004177 |
| ProSiteProfiles | PS51043 | DDHD domain profile. | 780 | 977 | 40.151695 | IPR004177 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 612 | - | - |
| Coils | Coil | Coil | 720 | 740 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31480.1 | shoot gravitropism 2 (SGR2). encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole. | 0 |
| RefSeq | XP_017252540.1 | PREDICTED: phospholipase SGR2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8W5R2 | Phospholipase SGR2 OS=Arabidopsis thaliana OX=3702 GN=SGR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZF43 | DDHD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019079 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 68.20562 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 54.058983 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 44.544182 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 48.889835 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 45.259338 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 51.648907 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 50.173645 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 69.287613 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 39.623394 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 39.182533 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.157463 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.411324 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.935085 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.883575 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.68682 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.342938 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.740932 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.371034 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.585018 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.868246 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.894138 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.341637 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.80905 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.601179 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.571938 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.220707 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.511244 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.154303 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.018806 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.625887 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.831283 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.46487 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.44929 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.395328 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.756474 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.665235 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.307043 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.124599 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.97031 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.531734 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.505837 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.611004 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.688206 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 24.589771 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 25.521284 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.3944 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.962282 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.299307 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.7227 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.255323 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38077 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22767 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024867 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20651, Sbi_jg23108 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16969 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016816 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12621, Sgl17886, Sgl75932 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015689, gene:ENSEOMG00000035581 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0016300, CQ.Regalona.r1.1BG0009400 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30034020, pistato.v30035460 |
| Apiaceae | Apium graveolens | 1 | Ag8G01627 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G021460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719489 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2784.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G09987, Ftri8G14487 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006721m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g27280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g047340.2N, BniB07g019170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1672 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1727 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04220 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g09200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12474, nbisL1-mrna-12475, nbisL1-mrna-1749 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1181 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025515 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11506 |
| Poaceae | Echinochloa crus-galli | 4 | AH08.91, BH03.4307, BH08.40, CH08.158 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0552200, gene-QOZ80_7BG0583200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0705980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033247 |
| Poaceae | Oryza coarctata | 1 | Oco16G000660 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G006700, gene-BS78_07G013700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402670 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G027650, Chr24G002530, Chr28G000320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G551500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045010, gene_TRIDC7BG036410 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G320600.1, TraesCS7B02G221600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb174090_P001, Zm00001eb260480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51934 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22361 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1248, evm.TU.LG05.1784 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g10150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1348, evm.TU.Scaffold_8_RagTag.492 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20142, nbisL1-mrna-20159, nbisL1-mrna-9770 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13499, nbisL1-mrna-2234 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13308, nbisL1-mrna-18077 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.279, evm.TU.utg000018l.679 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003817, Maker00012069 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-9021, nbisL1-mrna-9608 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18548, nbisL1-mrna-18673 |
| Salicaceae | Populus euphratica | 2 | populus_peu16479, populus_peu19030 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625237 |
| Solanaceae | Solanum chilense | 1 | SOLCI007436000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007982 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7344 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2482 |
| Zosteraceae | Zostera marina | 2 | Zosma04g15890.v3.1, Zosma05g01320.v3.1 |