halophFGD

Basic Information

Locus ID: Ag8G01626

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Cysteine-rich receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	223551964	223555654	-	Ag8G01626

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.06	92,437.08 Da	31.03	100.29	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	112	387	5.78399E-84	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	111	384	6.6E-43	IPR001245
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	573	817	5.2E-21	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	83	388	3.51E-73	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	510	818	2.39E-40	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	186	410	1.5E-58	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	487	610	9.9E-15	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	612	824	1.5E-35	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	66	185	1.0E-27	-
SMART	SM00220	serkin_6	106	389	8.3E-30	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	106	389	34.223373	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	527	824	21.417969	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	235	247	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	112	135	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G39000.1	Malectin/receptor-like protein kinase family protein.
RefSeq	XP_017220737.1	PREDICTED: receptor like protein kinase S.2-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FID8	Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1
TrEMBL	A0A251TJ13	Putative serine/threonine/dual specificity protein kinase, catalytic domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0295131 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.218444	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.448268	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.545541	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.531237	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.366251	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.442651	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.97372	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.237471	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.793317	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.159589	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.091272	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.462384	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.037827	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.995171	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.318403	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.538747	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.360111	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.311959	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.397635	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.806843	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.477899	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.068896	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.079582	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.578947	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.456435	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.03187	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.032048	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.498068		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.103947		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.14156		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.122567		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.213639		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.212015		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.662666		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.472433		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.855127		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.929086	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.658822	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.946112	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	12.611459	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.089329	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.291776	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.169843	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.235752	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.348874	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.417183	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.540845	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.892035	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	2	Ag8G01622, Ag8G01626