halophFGD

Basic Information

Locus ID: Ag8G01622

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	223320092	223323585	-	Ag8G01622

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.87	54,717.39 Da	33.22	91.13	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	294	441	3.5E-19	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	74	145	7.08E-5	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	269	479	2.87E-40	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	373	482	7.7E-17	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	55	155	1.9E-11	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	261	372	7.2E-24	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	289	487	23.453266	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	295	327	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76360.1	Protein kinase superfamily protein.
RefSeq	XP_017223171.1	PREDICTED: protein kinase 2B, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	P27450	Probable serine/threonine-protein kinase CST OS=Arabidopsis thaliana OX=3702 GN=CST PE=1 SV=2
TrEMBL	A0A175YRD1	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027176 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.962863	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.552929	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.33658	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.284276	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.967951	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.314578	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.627879	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.815248	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.750205	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.835806	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.364648	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.095226	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.168926	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.670458	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.751955	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.277447	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.345705	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.60359	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.930072	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.973043	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.741223	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.185292	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.327825	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.260666	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.171406	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.914437	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.574883	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.129686		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.088446		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.783081		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.371252		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.585567		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.839458		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.573551		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.486617		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.595714	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.626175	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.773453	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.777743	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.270984	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.967894	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.099445	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.573636	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.427544	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.489274	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	2	Ag8G01622, Ag8G01626