halophFGD

Basic Information

Locus ID: Ag8G01597

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: amine oxidase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	220052939	220055711	-	Ag8G01597

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.72	73,234.39 Da	39.33	83.13	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01179	Copper amine oxidase, enzyme domain	240	645	1.6E-131	IPR015798
Pfam	PF02728	Copper amine oxidase, N3 domain	119	214	2.1E-19	IPR015802
Pfam	PF02727	Copper amine oxidase, N2 domain	23	111	6.4E-22	IPR015800
SUPERFAMILY	SSF54416	Amine oxidase N-terminal region	22	116	8.9E-22	IPR016182
SUPERFAMILY	SSF54416	Amine oxidase N-terminal region	117	223	8.18E-28	IPR016182
SUPERFAMILY	SSF49998	Amine oxidase catalytic domain	240	645	2.35E-139	IPR036460
Gene3D	G3DSA:3.10.450.40	-	21	119	2.8E-28	-
Gene3D	G3DSA:3.10.450.40	-	121	212	9.4E-22	-
Gene3D	G3DSA:2.70.98.20	Copper amine oxidase, catalytic domain	242	646	3.2E-151	IPR036460
ProSitePatterns	PS01164	Copper amine oxidase topaquinone signature.	388	401	-	IPR000269

Gene Ontology

Biological Process:

GO:0009308 (amine metabolic process)

Molecular Function:

GO:0005507 (copper ion binding) GO:0008131 (primary methylamine oxidase activity) GO:0048038 (quinone binding)

KEGG Pathway

KO Term:

K00276 (primary-amine oxidase [EC:1.4.3.21])

Pathway:

ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00350 (Tyrosine metabolism) map00350 (Tyrosine metabolism) ko00360 (Phenylalanine metabolism) map00360 (Phenylalanine metabolism) ko00410 (beta-Alanine metabolism) map00410 (beta-Alanine metabolism) ko00950 (Isoquinoline alkaloid biosynthesis) map00950 (Isoquinoline alkaloid biosynthesis) ko00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) map00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R02382 (Tyramine + H2O + Oxygen <=> 4-Hydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R02529 (Aminoacetone + H2O + Oxygen <=> Methylglyoxal + Ammonia + Hydrogen peroxide) R02613 (Phenethylamine + Oxygen + H2O <=> Phenylacetaldehyde + Ammonia + Hydrogen peroxide) R03139 (1,3-Diaminopropane + Oxygen + H2O <=> 3-Aminopropanal + Ammonia + Hydrogen peroxide) R04027 (N-Methylputrescine + Oxygen + H+ <=> 1-Methylpyrrolinium + Hydrogen peroxide + Ammonia) R04300 (Dopamine + H2O + Oxygen <=> 3,4-Dihydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R06154 (Methylamine + Oxygen + H2O <=> Formaldehyde + Ammonia + Hydrogen peroxide) R06740 (Cadaverine + H2O + Oxygen <=> 5-Aminopentanal + Ammonia + Hydrogen peroxide)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G14940.1	amine oxidase 1. atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.
RefSeq	XP_017220847.1	PREDICTED: primary amine oxidase-like [Daucus carota subsp. sativus]
Swiss-Prot	O23349	Primary amine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=AO1 PE=1 SV=1
TrEMBL	A0A175YP35	Amine oxidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027209 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.50833	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.670365	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.876093	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.931192	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.098866	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.490267	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.252689	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.342321	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.546736	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.405054	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.371186	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.966605	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.22026	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.046231	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.724835	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.763684	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.081789	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.534689	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.559331	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.258754	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.037924	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.442589	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.64447	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.111689	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.383999	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.521095	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.113782	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.261945	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.769968	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.314722		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.060073		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.621971		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.413302		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.034494		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.022341		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.234879	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.374335	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.172657	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.418256	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.736277	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.189417	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.295395	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.096823	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.856592	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.271653	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.037013	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.184403	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg12557, jg23376, jg27588, jg27899, jg27901, jg37223 ... jg37224
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14835, gene_15551
Amaranthaceae	Atriplex hortensis	4	Ah004711, Ah004715, Ah011665, Ah020336
Amaranthaceae	Beta vulgaris	5	BVRB_5g098280, BVRB_5g098290, BVRB_5g098350, BVRB_5g098370 ... BVRB_5g108020
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg31372, Sbi_jg4867, Sbi_jg4872, Sbi_jg57907, Sbi_jg6998 ... Sbi_jg57908, Sbi_jg7229, Sbi_jg7230
Amaranthaceae	Salicornia europaea	4	Seu_jg12778, Seu_jg12779, Seu_jg13104, Seu_jg25539
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00001478, GOSA_00001479, GOSA_00001480, GOSA_00001481 ... GOSA_00001486, GOSA_00001487, GOSA_00003955, GOSA_00003956
Amaranthaceae	Suaeda glauca	16	Sgl00133, Sgl00137, Sgl00281, Sgl00287, Sgl05195, Sgl05337 ... Sgl05343, Sgl18224, Sgl51632, Sgl51633, Sgl51642, Sgl56936, Sgl56937, Sgl56938, Sgl56945, Sgl56946
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000007109, gene:ENSEOMG00000013615 ... gene:ENSEOMG00000013798, gene:ENSEOMG00000020876, gene:ENSEOMG00000022059, gene:ENSEOMG00000024552, gene:ENSEOMG00000030867, gene:ENSEOMG00000037412, gene:ENSEOMG00000046903, gene:ENSEOMG00000050257
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.3AG0015250, CQ.Regalona.r1.3BG0014590 ... CQ.Regalona.r1.5AG0000730, CQ.Regalona.r1.5BG0000860, CQ.Regalona.r1.5BG0000920, CQ.Regalona.r1.9AG0010050, CQ.Regalona.r1.9BG0012380
Anacardiaceae	Pistacia vera	5	pistato.v30143350, pistato.v30143370, pistato.v30191620 ... pistato.v30236890, pistato.v30236910
Apiaceae	Apium graveolens	4	Ag6G01755, Ag8G01597, Ag9G02437, Ag9G02438
Arecaceae	Cocos nucifera	5	COCNU_06G014360, COCNU_07G001890, COCNU_14G012350 ... COCNU_14G012360, COCNU_14G012370
Arecaceae	Phoenix dactylifera	1	gene-LOC103706132
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1268.V1.1, AsparagusV1_03.1540.V1.1 ... AsparagusV1_10.124.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G25881, Ftri7G33144
Brassicaceae	Arabidopsis thaliana	9	AT1G31670.1, AT1G31690.1, AT1G31710.1, AT1G62810.1 ... AT3G43670.1, AT4G12270.1, AT4G12280.1, AT4G12290.1, AT4G14940.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006982m.g.v1.0, Thhalv10007005m.g.v1.0 ... Thhalv10023306m.g.v1.0, Thhalv10024636m.g.v1.0, Thhalv10028460m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27360.v2.2, Sp2g01790.v2.2, Sp6g05290.v2.2 ... Sp7g13090.v2.2
Brassicaceae	Brassica nigra	9	BniB01g032540.2N, BniB01g032550.2N, BniB02g058720.2N ... BniB05g021160.2N, BniB05g056570.2N, BniB05g056590.2N, BniB07g018960.2N, BniB07g019010.2N, BniB07g019020.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G0141, Ceq03G0145, Ceq09G1332, Ceq09G1339, Ceq09G1340
Casuarinaceae	Casuarina glauca	7	Cgl03G0159, Cgl03G0163, Cgl03G0172, Cgl09G1422, Cgl09G1428 ... Cgl09G1429, Cgl09G1430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g11650, gene.Cymno18g02970
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g03650, gene.Thate02g07180, gene.Thate02g23120 ... gene.Thate02g37610
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4973, nbisL1-mrna-5425
Nitrariaceae	Nitraria sibirica	8	evm.TU.LG10.1253, evm.TU.LG11.1048, evm.TU.LG11.1050 ... evm.TU.LG11.1052, evm.TU.LG11.1053, evm.TU.LG11.1054, evm.TU.LG11.1055, evm.TU.LG11.1056
Plantaginaceae	Plantago ovata	4	Pov_00004232, Pov_00004236, Pov_00022685, Pov_00026221
Plumbaginaceae	Limonium bicolor	4	Lb2G08954, Lb2G08955, Lb2G08956, Lb2G08962
Poaceae	Echinochloa crus-galli	17	AH03.3407, AH03.3409, AH03.3410, AH03.759, AH03.807, AH08.47 ... AH09.407, BH03.3638, BH03.3639, BH03.3640, BH03.894, BH03.930, BH07.2377, CH03.1004, CH03.1059, CH03.3836, CH07.2454
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_4AG0323880, gene-QOZ80_4BG0354440 ... gene-QOZ80_7AG0562390, gene-QOZ80_7AG0573670, gene-QOZ80_7BG0588850, gene-QOZ80_7BG0593540, gene-QOZ80_7BG0604960
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0106870.1, HORVU.MOREX.r3.4HG0403000.1 ... HORVU.MOREX.r3.4HG0403010.1
Poaceae	Lolium multiflorum	10	gene-QYE76_030432, gene-QYE76_037523, gene-QYE76_038470 ... gene-QYE76_038471, gene-QYE76_040144, gene-QYE76_040146, gene-QYE76_040195, gene-QYE76_040206, gene-QYE76_040558, gene-QYE76_048127
Poaceae	Oryza coarctata	5	Oco07G002130, Oco07G002170, Oco12G009660, Oco13G010580 ... Oco14G011280
Poaceae	Oryza sativa	4	LOC_Os04g20164.1, LOC_Os06g23114.1, LOC_Os06g23140.1 ... LOC_Os12g27110.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G115000, gene-BS78_02G115100, gene-BS78_K230200 ... gene-BS78_02G322300, gene-BS78_02G322400
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0304502, Pt_Chr0304582, Pt_Chr0304584, Pt_Chr0304586 ... Pt_Chr0305534
Poaceae	Sporobolus alterniflorus	3	Chr24G010730, Chr26G003080, Chr28G009940
Poaceae	Thinopyrum elongatum	2	Tel2E01G167800, Tel4E01G474900
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG008460, gene_TRIDC2BG010180 ... gene_TRIDC4AG002880, gene_TRIDC4BG048750
Poaceae	Triticum aestivum	6	TraesCS2A02G076300.1, TraesCS2B02G091300.1 ... TraesCS2D02G075000.1, TraesCS4A02G020900.1, TraesCS4B02G282700.1, TraesCS4D02G281700.1
Poaceae	Zea mays	2	Zm00001eb107350_P001, Zm00001eb420190_P001
Poaceae	Zoysia japonica	3	nbis-gene-27649, nbis-gene-52772, nbis-gene-631
Poaceae	Zoysia macrostachya	3	Zma_g19383, Zma_g4996, Zma_g6695
Portulacaceae	Portulaca oleracea	11	evm.TU.LG05.2210, evm.TU.LG05.2211, evm.TU.LG10.220 ... evm.TU.LG10.223, evm.TU.LG10.224, evm.TU.LG10.225, evm.TU.LG10.227, evm.TU.LG17.212, evm.TU.LG17.215, evm.TU.LG17.216, evm.TU.LG17.218
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g06940
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_16_RagTag.284, evm.TU.Scaffold_16_RagTag.285 ... evm.TU.Scaffold_3_RagTag.448, evm.TU.Scaffold_3_RagTag.449, evm.TU.Scaffold_3_RagTag.450
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-1468, nbisL1-mrna-1469, nbisL1-mrna-1470 ... nbisL1-mrna-22520, nbisL1-mrna-22521, nbisL1-mrna-31011, nbisL1-mrna-31012
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-5210, nbisL1-mrna-5211, nbisL1-mrna-6484 ... nbisL1-mrna-6485, nbisL1-mrna-6486
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-20239, nbisL1-mrna-6178, nbisL1-mrna-6179 ... nbisL1-mrna-6180, nbisL1-mrna-6181, nbisL1-mrna-6182
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.393, evm.TU.utg000019l.949 ... evm.TU.utg000019l.950, evm.TU.utg000022l.320, evm.TU.utg000022l.321
Rhizophoraceae	Kandelia obovata	4	Maker00012751, Maker00012803, Maker00014370, Maker00014379
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-18129, nbisL1-mrna-3461, nbisL1-mrna-3462 ... nbisL1-mrna-6348, nbisL1-mrna-6349
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-2118, nbisL1-mrna-2119, nbisL1-mrna-6592 ... nbisL1-mrna-6593, nbisL1-mrna-6594
Salicaceae	Populus euphratica	6	populus_peu03428, populus_peu03429, populus_peu07374 ... populus_peu21373, populus_peu21374, populus_peu21375
Solanaceae	Lycium barbarum	5	gene-LOC132611042, gene-LOC132611043, gene-LOC132618551 ... gene-LOC132635052, gene-LOC132636385
Solanaceae	Solanum chilense	3	SOLCI000977800, SOLCI002989600, SOLCI003526200
Solanaceae	Solanum pennellii	4	gene-LOC107012994, gene-LOC107028398, gene-LOC107030442 ... gene-LOC107030611
Tamaricaceae	Reaumuria soongarica	2	STRG.24031_chr05_-, gene_9347
Tamaricaceae	Tamarix chinensis	1	TC01G2883
Zosteraceae	Zostera marina	1	Zosma02g06220.v3.1