halophFGD

Basic Information

Locus ID: Ag8G01555

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the eukaryotic ribosomal protein eS21 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	215573293	215574433	-	Ag8G01555

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.79	9,034.15 Da	5.54	72.22	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01249	Ribosomal protein S21e	1	77	7.0E-38	IPR001931
Gene3D	G3DSA:3.30.1230.20	-	1	80	4.1E-40	IPR038579
PIRSF	PIRSF002148	RPS21e	1	81	4.0E-37	IPR001931
ProSitePatterns	PS00996	Ribosomal protein S21e signature.	11	19	-	IPR018279

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02971 (small subunit ribosomal protein S21e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G27700.1	Ribosomal protein S21e .
RefSeq	XP_017220375.1	PREDICTED: 40S ribosomal protein S21-2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q3E902	Small ribosomal subunit protein eS21y OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2
TrEMBL	A0A175YII3	40S ribosomal protein S21 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027247 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	31.295307	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	36.445877	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	22.380291	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.055771	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.685427	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.828924	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	13.845044	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	9.273356	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	56.692341	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	53.206608	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	50.574524	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	56.520229	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	56.456997	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	71.251472	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	65.179253	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	74.505913	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	101.017853	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	82.066353	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	75.785133	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	65.115974	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	77.906136	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	90.502747	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	88.702187	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	110.947296	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	92.389717	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	81.823204	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	88.735626	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	71.864532	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	84.405807	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	45.579094		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	49.8517		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	57.433647		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	63.71991		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	76.643822		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	60.024719		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	90.366211		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	86.703552		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	101.529793		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	63.248974	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	51.437885	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	43.384003	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	72.212051	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	76.410774	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	90.878189	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	91.881134	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	96.111946	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	88.943298	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	144.441269	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	145.048859	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	132.550369	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35775, jg8340
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24351, gene_6330
Amaranthaceae	Atriplex hortensis	2	Ah033946, Ah035102
Amaranthaceae	Beta vulgaris	1	BVRB_4g077850
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg16835, Sbi_jg21540, Sbi_jg21541, Sbi_jg22276 ... Sbi_jg22277, Sbi_jg61367
Amaranthaceae	Salicornia europaea	7	Seu_jg121, Seu_jg16206, Seu_jg16207, Seu_jg18389, Seu_jg2 ... Seu_jg25971, Seu_jg28747
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00008799
Amaranthaceae	Suaeda glauca	11	Sgl20786, Sgl25378, Sgl26168, Sgl30557, Sgl36122, Sgl37877 ... Sgl41426, Sgl41571, Sgl46380, Sgl62751, Sgl67368
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000017486, gene:ENSEOMG00000020833 ... gene:ENSEOMG00000048753
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1BG0020690, CQ.Regalona.r1.2AG0022430
Apiaceae	Apium graveolens	2	Ag1G01958, Ag8G01555
Arecaceae	Cocos nucifera	2	COCNU_01G001570, COCNU_04G010070
Arecaceae	Phoenix dactylifera	4	gene-LOC103715098, gene-LOC103715276, gene-LOC103718617 ... gene-LOC120107923
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.2102.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G29166, Ftri9G04755
Brassicaceae	Arabidopsis thaliana	2	AT3G53890.1, AT5G27700.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005213m.g.v1.0, Thhalv10005214m.g.v1.0 ... Thhalv10011086m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g16650.v2.2, Sp2g20860.v2.2, Sp5g08510.v2.2
Brassicaceae	Brassica nigra	8	BniB02g079040.2N, BniB02p000267.2N, BniB04g004800.2N ... BniB06g057680.2N, BniB06g065840.2N, BniB07g035950.2N, BniB07g038620.2N, BniB08g068280.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq09G1161, Ceq09G1162
Casuarinaceae	Casuarina glauca	2	Cgl09G1249, Cgl09G1250
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g14440
Dunaliellaceae	Dunaliella salina	1	Dusal.0001s00040.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g07230
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG11.1313
Plantaginaceae	Plantago ovata	2	Pov_00007244, Pov_00015553
Plumbaginaceae	Limonium bicolor	3	Lb1G05747, Lb1G05810, Lb4G21548
Poaceae	Echinochloa crus-galli	6	AH01.3662, AH03.4022, BH01.4012, BH03.4357, CH01.4284 ... CH07.158
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0220720, gene-QOZ80_3BG0265820 ... gene-QOZ80_3BG0280310, gene-QOZ80_7AG0581320, gene-QOZ80_7BG0612380
Poaceae	Lolium multiflorum	2	gene-QYE76_038853, gene-QYE76_067936
Poaceae	Oryza coarctata	4	Oco05G013350, Oco05G019770, Oco06G013080, Oco13G015480
Poaceae	Oryza sativa	1	LOC_Os03g46490.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G118800, gene-BS78_01G356800 ... gene-BS78_02G385800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0305194, Pt_Chr0305236
Poaceae	Sporobolus alterniflorus	7	Chr01G034480, Chr04G011190, Chr07G010560, Chr07G025140 ... Chr0G033350, Chr12G005110, Chr24G012690
Poaceae	Thinopyrum elongatum	2	Tel2E01G245500, Tel4E01G251500
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG013930, gene_TRIDC2BG016790 ... gene_TRIDC2BG077320, gene_TRIDC4AG019900, gene_TRIDC4BG029360, gene_TRIDC4BG048640, gene_TRIDC6BG035840, gene_TRIDC7BG056720
Poaceae	Triticum aestivum	10	TraesCS2A02G115100.1, TraesCS2B02G059900.1 ... TraesCS2B02G134300.1, TraesCS2D02G115900.1, TraesCS3B02G033900.1, TraesCS4A02G139600.1, TraesCS4B02G154700.1, TraesCS4D02G167600.1, TraesCS7B02G355000.1, TraesCS7B02G445200.1
Poaceae	Zea mays	6	Zm00001eb016600_P002, Zm00001eb090410_P001 ... Zm00001eb211090_P001, Zm00001eb276520_P001, Zm00001eb285290_P001, Zm00001eb394850_P001
Poaceae	Zoysia japonica	4	nbis-gene-129, nbis-gene-15802, nbis-gene-1607 ... nbis-gene-3310
Poaceae	Zoysia macrostachya	4	Zma_g1223, Zma_g3036, Zma_g3648, Zma_g7051
Portulacaceae	Portulaca oleracea	4	evm.TU.LG05.522, evm.TU.LG10.39, evm.TU.LG17.33 ... evm.TU.LG25.802
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g32730, gene.Posoc02g08430
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.119, evm.TU.Scaffold_2_RagTag.2061
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-2738, nbisL1-mrna-2740, nbisL1-mrna-2838 ... nbisL1-mrna-8157, nbisL1-mrna-9118
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-5133
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-5200
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.54, evm.TU.utg000012l.87
Rhizophoraceae	Kandelia obovata	2	Maker00006173, Maker00011476
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12985, nbisL1-mrna-7872
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-107, nbisL1-mrna-16149
Salicaceae	Populus euphratica	2	populus_peu13367, populus_peu15698
Solanaceae	Lycium barbarum	4	gene-LOC132615387, gene-LOC132622932, gene-LOC132626796 ... gene-LOC132632322
Solanaceae	Solanum chilense	2	SOLCI002239700, SOLCI002398500
Solanaceae	Solanum pennellii	4	gene-LOC107015886, gene-LOC107017139, gene-LOC107022097 ... gene-LOC107030101
Tamaricaceae	Reaumuria soongarica	2	gene_17842, gene_7080
Zosteraceae	Zostera marina	3	Zosma01g40640.v3.1, Zosma03g18490.v3.1, Zosma03g18850.v3.1