halophFGD

Basic Information

Locus ID: Ag8G01539

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: IAA7

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	212545110	212554288	-	Ag8G01539

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.69	27,602.59 Da	40.48	79.44	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	25	240	4.5E-76	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	106	230	1.63E-19	-
Gene3D	G3DSA:3.10.20.90	-	107	242	2.6E-41	-
ProSiteProfiles	PS51745	PB1 domain profile.	110	231	20.571501	IPR000270

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G14550.1	indole-3-acetic acid inducible 14. IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.
RefSeq	XP_017220793.1	PREDICTED: auxin-responsive protein IAA14-like [Daucus carota subsp. sativus]
Swiss-Prot	Q38832	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=2
TrEMBL	A0A175YNX7	Auxin-responsive protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027269 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.270977	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.461885	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.330785	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.493631	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.170379	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.06329	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.392944	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.545199	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.665824	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.299316	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.529527	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.074739	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.571259	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.776749	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	20.674824	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.153032	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.28841	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	12.868515	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	18.862606	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.074352	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.535732	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	25.686832	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	18.053249	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	18.643831	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	20.344742	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	33.345516	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.867293	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	27.460491	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.862445		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.311453		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.001335		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.054278		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.149188		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.010266	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.450994	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.170209	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.595496	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.086307	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.871858	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.523441	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.544465	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.011654	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.387317	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11124, jg12644, jg27827, jg35374, jg37839
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10080, gene_13522, gene_26164
Amaranthaceae	Atriplex hortensis	5	Ah000272, Ah002353, Ah006130, Ah010686, Ah010689
Amaranthaceae	Beta vulgaris	3	BVRB_4g082260, BVRB_5g120320, BVRB_9g220380
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11486, Sbi_jg16808, Sbi_jg31549, Sbi_jg46417 ... Sbi_jg57732, Sbi_jg61331
Amaranthaceae	Salicornia europaea	3	Seu_jg20737, Seu_jg23056, Seu_jg25378
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005252, GOSA_00008210, GOSA_00019482
Amaranthaceae	Suaeda glauca	6	Sgl24837, Sgl29983, Sgl54307, Sgl55866, Sgl59651, Sgl61177
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000007236, gene:ENSEOMG00000009301 ... gene:ENSEOMG00000016268, gene:ENSEOMG00000022044, gene:ENSEOMG00000026426, gene:ENSEOMG00000028312, gene:ENSEOMG00000038928, gene:ENSEOMG00000041243, gene:ENSEOMG00000052305
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0010570, CQ.Regalona.r1.4BG0010780 ... CQ.Regalona.r1.5AG0025620, CQ.Regalona.r1.5BG0027140, CQ.Regalona.r1.7BG0010680, CQ.Regalona.r1.9AG0013930
Anacardiaceae	Pistacia vera	4	pistato.v30026330, pistato.v30126730, pistato.v30184390 ... pistato.v30235710
Apiaceae	Apium graveolens	6	Ag10G00701, Ag1G01812, Ag2G02343, Ag6G01457, Ag8G01539 ... Ag9G01735
Arecaceae	Cocos nucifera	5	COCNU_03G001830, COCNU_06G000680, COCNU_06G015060 ... COCNU_14G000940, COCNU_14G011810
Arecaceae	Phoenix dactylifera	4	gene-LOC103705980, gene-LOC103721655, gene-LOC103722711 ... gene-LOC120105940
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.3214.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G31326, Ftri9G33260, FtriNA08258
Brassicaceae	Arabidopsis thaliana	4	AT1G04250.1, AT3G04730.1, AT3G23050.1, AT4G14550.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10008679m.g.v1.0, Thhalv10021428m.g.v1.0 ... Thhalv10021441m.g.v1.0, Thhalv10026031m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g03060.v2.2, Sp3g03580.v2.2, Sp3g20720.v2.2 ... Sp7g12640.v2.2
Brassicaceae	Brassica nigra	9	BniB01g039200.2N, BniB01g058840.2N, BniB02g001610.2N ... BniB03g000750.2N, BniB03g024990.2N, BniB06g046620.2N, BniB07g020120.2N, BniB07g048860.2N, BniB07g062090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq06G0708, Ceq06G1393, Ceq06G2378, Ceq07G0381
Casuarinaceae	Casuarina glauca	4	Cgl06G0730, Cgl06G1456, Cgl06G2502, Cgl07G0393
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g01280, gene.Cymno06g02130, gene.Cymno06g12860
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g40890, gene.Thate02g40990
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-5002, nbisL1-mrna-6331, nbisL1-mrna-6333 ... nbisL1-mrna-7868
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2256, evm.TU.LG04.1192, evm.TU.LG11.907
Plantaginaceae	Plantago ovata	3	Pov_00007915, Pov_00018007, Pov_00024671
Plumbaginaceae	Limonium bicolor	5	Lb1G06946, Lb1G07951, Lb2G10315, Lb3G18377, Lb3G18983
Poaceae	Echinochloa crus-galli	16	AH01.1210, AH05.3968, AH05.581, AH06.1662, BH01.1513 ... BH01.789, BH05.4060, BH05.628, BH06.1603, CH01.1438, CH01.785, CH01.787, CH05.4270, CH05.724, CH06.1760, Contig309.126
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0000810, gene-QOZ80_3AG0216690 ... gene-QOZ80_3AG0225050, gene-QOZ80_3BG0261960, gene-QOZ80_3BG0270310, gene-QOZ80_5AG0396890, gene-QOZ80_5AG0400970, gene-QOZ80_5BG0445380, gene-QOZ80_5BG0449560, gene-QOZ80_6AG0530850, gene-QOZ80_6BG0484690
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.5HG0433470.1, HORVU.MOREX.r3.5HG0509120.1 ... HORVU.MOREX.r3.5HG0509730.1, HORVU.MOREX.r3.5HG0509760.1, HORVU.MOREX.r3.7HG0711230.1
Poaceae	Lolium multiflorum	4	gene-QYE76_000687, gene-QYE76_010490, gene-QYE76_035400 ... gene-QYE76_062927
Poaceae	Oryza coarctata	7	Oco01G005800, Oco02G005890, Oco06G019310, Oco06G024120 ... Oco12G009730, Oco23G009900, Oco24G009580
Poaceae	Oryza sativa	6	LOC_Os01g13030.1, LOC_Os03g43400.1, LOC_Os03g53150.1 ... LOC_Os05g14180.1, LOC_Os06g22870.1, LOC_Os12g40890.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G085300, gene-BS78_01G148800, gene-BS78_K179600 ... gene-BS78_08G135700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0100429, Pt_Chr0104448, Pt_Chr0107106, Pt_Chr0501467 ... Pt_Chr0704300
Poaceae	Sporobolus alterniflorus	12	Chr01G005580, Chr01G010970, Chr04G028360, Chr07G027310 ... Chr12G025960, Chr12G037930, Chr14G017350, Chr18G004990, Chr19G008040, Chr21G011790, Chr22G012400, Chr27G008620
Poaceae	Thinopyrum elongatum	5	Tel3E01G273600, Tel5E01G125800, Tel5E01G602200 ... Tel5E01G609500, Tel7E01G583200
Poaceae	Triticum dicoccoides	9	gene_TRIDC3AG020910, gene_TRIDC3BG031190 ... gene_TRIDC5AG008920, gene_TRIDC5AG055320, gene_TRIDC5AG055920, gene_TRIDC5BG009670, gene_TRIDC5BG059920, gene_TRIDC7AG047560, gene_TRIDC7BG040020
Poaceae	Triticum aestivum	15	TraesCS3A02G155200.1, TraesCS3B02G181500.1 ... TraesCS3D02G162700.1, TraesCS5A02G058600.1, TraesCS5A02G378300.2, TraesCS5A02G382600.1, TraesCS5B02G058500.1, TraesCS5B02G381900.1, TraesCS5B02G386800.1, TraesCS5D02G069300.1, TraesCS5D02G388300.2, TraesCS5D02G392000.1, TraesCS7A02G331100.1, TraesCS7B02G242800.1, TraesCS7D02G339300.1
Poaceae	Zea mays	4	Zm00001eb056870_P001, Zm00001eb135550_P001 ... Zm00001eb215120_P001, Zm00001eb350370_P005
Poaceae	Zoysia japonica	7	nbis-gene-15030, nbis-gene-16112, nbis-gene-24271 ... nbis-gene-35452, nbis-gene-44587, nbis-gene-47576, nbis-gene-47901
Poaceae	Zoysia macrostachya	8	Zma_g25292, Zma_g26085, Zma_g27888, Zma_g2824, Zma_g30120 ... Zma_g32319, Zma_g503, Zma_g9503
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2868, evm.TU.LG02.1145, evm.TU.LG07.1722 ... evm.TU.LG08.524, evm.TU.LG09.828, evm.TU.LG11.550, evm.TU.LG15.1484, evm.TU.LG16.1241, evm.TU.LG20.1258, evm.TU.LG22.1553
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02690
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_18_RagTag.468, evm.TU.Scaffold_1_RagTag.281 ... evm.TU.Scaffold_2_RagTag.1943, evm.TU.Scaffold_6_RagTag.817, evm.TU.Scaffold_9_RagTag.954
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1554, nbisL1-mrna-15869, nbisL1-mrna-21246 ... nbisL1-mrna-3360, nbisL1-mrna-7919
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10099, nbisL1-mrna-10705, nbisL1-mrna-18117 ... nbisL1-mrna-7608
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-13778, nbisL1-mrna-18353, nbisL1-mrna-5339 ... nbisL1-mrna-693, nbisL1-mrna-7892
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.493, evm.TU.utg000009l.124 ... evm.TU.utg000011l.505, evm.TU.utg000012l.190, evm.TU.utg000023l.172
Rhizophoraceae	Kandelia obovata	5	Maker00005777, Maker00007555, Maker00009251, Maker00011225 ... Maker00018742
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12914, nbisL1-mrna-1477, nbisL1-mrna-15255 ... nbisL1-mrna-7311, nbisL1-mrna-7770
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16248, nbisL1-mrna-256, nbisL1-mrna-4224 ... nbisL1-mrna-5093
Salicaceae	Populus euphratica	9	populus_peu02797, populus_peu02804, populus_peu07468 ... populus_peu13586, populus_peu15127, populus_peu15928, populus_peu21481, populus_peu32790, populus_peu33621
Solanaceae	Lycium barbarum	6	gene-LOC132598496, gene-LOC132605635, gene-LOC132610770 ... gene-LOC132633355, gene-LOC132642624, gene-LOC132645298
Solanaceae	Solanum chilense	3	SOLCI001357900, SOLCI001391400, SOLCI002322500
Solanaceae	Solanum pennellii	5	gene-LOC107008367, gene-LOC107012644, gene-LOC107021546 ... gene-LOC107022057, gene-LOC107031695
Tamaricaceae	Reaumuria soongarica	2	STRG.17638_chr09_-, STRG.28466_chr04_-
Tamaricaceae	Tamarix chinensis	4	TC02G3469, TC05G1184, TC07G2315, TC12G1301
Zosteraceae	Zostera marina	1	Zosma06g24040.v3.1