Basic Information
Locus ID:
Ag8G01477
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
THO complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 202045330 | 202047084 | + | Ag8G01477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 41,248.01 Da | 42.52 | 77.73 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 88 | 123 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 282 | 9.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 199 | 233 | 1.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 22 | 357 | 1.13E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 141 | 8.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 142 | 373 | 2.3E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 82 | 124 | 0.067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 282 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 233 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 361 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 191 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 60 | 350.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 242 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 201 | 233 | 10.811958 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19430.1 | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | 0 |
| RefSeq | XP_017238164.1 | PREDICTED: THO complex subunit 6 [Daucus carota subsp. sativus] | 0 |
| Q8L4M1 | THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AIY5 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010507 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.832811 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.253525 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.829288 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.459038 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.620033 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.015541 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.798389 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.633226 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.400543 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.330894 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 51.320244 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 52.48624 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 43.365105 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.117649 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.8771 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.246029 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.139328 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.714508 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.018209 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.430346 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.419356 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 24.58028 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.288692 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.865549 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.066156 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.95776 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.478571 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.45399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.22233 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.879643 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.075279 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.922761 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.298279 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.094854 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.028091 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.728524 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.994934 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.886733 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.710804 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.578707 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.815547 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.598476 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.585501 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.889374 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.105957 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.490437 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.09129 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.252634 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.075632 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.433336 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32905 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11019 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015186 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40073, Sbi_jg55399, Sbi_jg55402 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14265 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014754 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41778, Sgl46580 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009539, gene:ENSEOMG00000032070 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014910, CQ.Regalona.r1.8BG0016200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30259610 |
| Apiaceae | Apium graveolens | 1 | Ag8G01477 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712961 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2041.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G19430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022744m.g.v1.0, Thhalv10023917m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g068700.2N, BniB04g025030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0835 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g03730, gene.Cymno16g04540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039624 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16953, Lb5G29491 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1695, BH03.1852, CH03.2029 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0533330, gene-QOZ80_UnG0724980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0475690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004697, gene-QYE76_059146 |
| Poaceae | Oryza coarctata | 2 | Oco17G003280, Oco18G003210 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g19900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G163600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702515 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G011480, Chr11G010830, Chr14G012750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G323100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030840, gene_TRIDC5BG032650 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G195000.2, TraesCS5B02G190400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb310980_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19889 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32517 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1613, evm.TU.LG22.512 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g03770 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1026 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1115 |
| Salicaceae | Populus euphratica | 1 | populus_peu23804 |
| Solanaceae | Solanum chilense | 1 | SOLCI007157000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024274 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16716 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1790 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01870.v3.1 |