Basic Information
Locus ID:
Ag8G01471
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 200654978 | 200660861 | + | Ag8G01471 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 101,472.33 Da | 48.57 | 75.89 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 519 | 736 | 2.82E-8 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 507 | 842 | 3.9E-7 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 206 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14310.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017215634.1 | PREDICTED: uncharacterized protein LOC108193477 [Daucus carota subsp. sativus] | 0 |
| F4JUQ2 | KIN14B-interacting protein At4g14310 OS=Arabidopsis thaliana OX=3702 GN=At4g14310 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164T6X8 | Transducin/WD40 repeat-like superfamily protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024278 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.739066 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.687457 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.97743 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.814686 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.67198 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.799401 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.427112 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.996246 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.222185 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.136167 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.252522 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.229486 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.498573 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.243344 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.228185 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.476813 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.737624 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.785017 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.81733 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.720052 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.004636 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.40529 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.817803 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.1037 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.217369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.071998 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.117397 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.862619 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.091522 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.768922 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.758923 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.050371 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.92331 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.548881 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.039281 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.178538 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.444279 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.799679 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.814677 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.486418 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.582409 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.816872 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.326507 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.905745 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.622421 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.11799 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.33633 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.478149 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.615472 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.88239 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12727, jg5819 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3014 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018269 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37873, Sbi_jg6035 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28180 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006131 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00944, Sgl05898, Sgl06021 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000031481, gene:ENSEOMG00000045871 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0008380, CQ.Regalona.r1.3BG0008510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30239410 |
| Apiaceae | Apium graveolens | 3 | Ag6G01990, Ag8G01471, AgUnG00236 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011760, COCNU_09G009770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706930, gene-LOC103721711 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.120.V1.1, AsparagusV1_10.1934.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G25018, Ftri12G06837 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14310.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024359m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1075 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1128 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03930 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g01460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12107 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.778 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022760 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11638, Lb2G11645 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3904, BH07.3713, CH07.3773 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0204270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026710 |
| Poaceae | Oryza coarctata | 2 | Oco03G024910, Oco04G025410 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G314900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604229 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G016920, Chr0G014040, Chr13G001160, Chr15G001050 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G687600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG056520, gene_TRIDC6BG066070 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G379900.1, TraesCS6B02G418500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb191660_P001, Zm00001eb258510_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8352 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14674 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1411 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.887 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15793 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11822, nbisL1-mrna-6645 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-757 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.549 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008183 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15214 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4284 |
| Salicaceae | Populus euphratica | 2 | populus_peu07545, populus_peu21564 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609473 |
| Solanaceae | Solanum chilense | 1 | SOLCI000183300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031700 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14164_chr08_+, STRG.7914_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1733 |