Basic Information
Locus ID:
Ag8G01413
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DUF1338
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 189591928 | 189596314 | + | Ag8G01413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 41,233.11 Da | 40.26 | 80.05 | -0.27 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07040.1 | 0 | |
| RefSeq | XP_017223694.1 | PREDICTED: uncharacterized protein LOC108200126 [Daucus carota subsp. sativus] | 0 |
| Q9LMJ7 | 2-oxoadipate dioxygenase/decarboxylase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07040 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YQU1 | DUF1338 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.302134 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.45426 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 45.341736 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.325939 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.646317 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 70.367157 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 58.245079 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 104.243492 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 70.028297 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 71.867157 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 73.536057 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 62.74789 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 56.437778 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 50.141563 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 42.069679 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.23954 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 32.341202 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 49.739407 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 40.081127 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 48.326 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 52.837265 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.955502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.332077 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 43.461388 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 42.281448 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 42.94907 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 42.449989 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 50.028461 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.21125 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 98.068771 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 72.087563 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 56.842457 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 121.833672 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 70.784698 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 126.669724 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 84.861511 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 81.317459 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 94.689972 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 94.156532 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 103.513115 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 128.593964 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 40.933357 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 138.270172 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 75.889175 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 123.731331 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 49.405739 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 90.402962 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 53.839546 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 48.061367 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 48.169022 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9371 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13469, gene_3733 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013132 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43127, Sbi_jg45725 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11574 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027595 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35965, Sgl41264 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000678, gene:ENSEOMG00000005909 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0007540, CQ.Regalona.r1.6BG0008140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224570 |
| Apiaceae | Apium graveolens | 1 | Ag8G01413 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G015750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709778 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.534.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G15312 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G07040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007958m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g05760.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g043720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0046 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0035 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g33190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.195 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22742 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1845, BH01.2159, CH01.2255 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127000, gene-QOZ80_2BG0182560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040790.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G005530, Oco20G005450 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g32680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G212700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502522 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013300, Chr15G015250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G273900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022210, gene_TRIDC1BG026930 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G145800.1, TraesCS1B02G164000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046510_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19272 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16152 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.325 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g24060 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.329 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22995 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11257 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14853 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.227 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006624 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7138 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15778 |
| Salicaceae | Populus euphratica | 1 | populus_peu07792 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641519 |
| Solanaceae | Solanum chilense | 1 | SOLCI002990800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019827 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_90 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0673 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24720.v3.1 |