halophFGD

Basic Information

Locus ID: Ag8G01407

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	189182497	189187434	-	Ag8G01407

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.40	17,336.31 Da	73.60	68.68	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	7	145	4.15828E-75	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	8	144	8.3E-53	IPR000608
SUPERFAMILY	SSF54495	UBC-like	1	150	5.64E-63	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	1	148	1.2E-67	IPR016135
SMART	SM00212	ubc_7	7	150	8.1E-69	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	4	150	60.136028	IPR000608
ProSitePatterns	PS00183	Ubiquitin-conjugating (UBC) active site signature.	77	92	-	IPR023313

KEGG Pathway

KO Term:

K10573 (ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G02760.1	ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.
RefSeq	XP_017223416.1	PREDICTED: ubiquitin-conjugating enzyme E2 2 [Daucus carota subsp. sativus]
Swiss-Prot	P42745	Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1
TrEMBL	A0A175YNK3	UBC core domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027393 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	92.539314	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	106.568069	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	138.556458	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	121.277954	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	122.46302	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	98.46801	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	93.804054	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	74.500122	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	166.486176	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	155.346161	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	161.775452	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	164.670258	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	166.620087	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	162.956924	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	203.206024	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	196.584549	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	272.953064	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	219.255295	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	219.934738	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	218.710037	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	210.246521	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	418.153442	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	400.446503	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	375.272034	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	382.833618	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	226.904648	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	250.676285	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	240.8815	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	262.964691	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	342.096619		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	289.418732		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	270.788788		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	253.121735		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	248.56958		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	268.849121		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	437.885254		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	414.762085		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	419.395569		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	87.939857	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	108.710503	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	117.668045	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	196.822159	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	375.266754	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	690.830261	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	641.709229	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	206.176666	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	500.322021	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	306.441284	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	299.183014	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	306.963196	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13099, jg18627, jg25771
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18215, gene_19609
Amaranthaceae	Atriplex hortensis	2	Ah000942, Ah014063
Amaranthaceae	Beta vulgaris	1	BVRB_6g154480
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg31182, Sbi_jg43139, Sbi_jg45738
Amaranthaceae	Salicornia europaea	2	Seu_jg11587, Seu_jg25713
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004584, GOSA_00026535
Amaranthaceae	Suaeda glauca	4	Sgl54647, Sgl54648, Sgl59986, Sgl59987
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002648, gene:ENSEOMG00000006960 ... gene:ENSEOMG00000015673, gene:ENSEOMG00000024786, gene:ENSEOMG00000025334, gene:ENSEOMG00000025569
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5BG0022550, CQ.Regalona.r1.6AG0001650 ... CQ.Regalona.r1.6BG0001760
Anacardiaceae	Pistacia vera	3	pistato.v30093150, pistato.v30137570, pistato.v30137580
Apiaceae	Apium graveolens	4	Ag2G01591, Ag4G00862, Ag8G01405, Ag8G01407
Arecaceae	Cocos nucifera	2	COCNU_06G000040, COCNU_14G006340
Arecaceae	Phoenix dactylifera	4	gene-LOC103696455, gene-LOC103704901, gene-LOC103709769 ... gene-LOC103719920
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.2310.V1.1, AsparagusV1_03.474.V1.1 ... AsparagusV1_05.1693.V1.1, AsparagusV1_06.811.V1.1, AsparagusV1_07.3308.V1.1, AsparagusV1_08.3298.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G33782, Ftri1G08110, Ftri6G30319
Brassicaceae	Arabidopsis thaliana	3	AT1G14400.1, AT2G02760.1, AT5G62540.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005070m.g.v1.0, Thhalv10005078m.g.v1.0 ... Thhalv10008589m.g.v1.0, Thhalv10019281m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g12770.v2.2, Sp2g13870.v2.2, Sp5g24910.v2.2
Brassicaceae	Brassica nigra	10	BniB02g009430.2N, BniB02g065560.2N, BniB03g005970.2N ... BniB03g005990.2N, BniB03g047480.2N, BniB04g002170.2N, BniB04g008940.2N, BniB04g014350.2N, BniB06g010810.2N, BniB06g039530.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1808, Ceq07G0059
Casuarinaceae	Casuarina glauca	1	Cgl04G1985
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g00460, gene.Cymno01g00470
Dunaliellaceae	Dunaliella salina	1	Dusal.0477s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g15650, gene.Thate02g29010, gene.Thate08g10390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11184, nbisL1-mrna-7969
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2006, evm.TU.LG03.205, evm.TU.LG10.903
Plantaginaceae	Plantago ovata	2	Pov_00023468, Pov_00031971
Plumbaginaceae	Limonium bicolor	2	Lb0G36725, Lb2G13278
Poaceae	Echinochloa crus-galli	9	AH02.374, AH03.327, BH02.401, BH03.3919, BH03.406, CH01.432 ... CH02.445, CH03.476, CH05.260
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0012530, gene-QOZ80_1BG0061180 ... gene-QOZ80_3AG0213050, gene-QOZ80_3BG0258200, gene-QOZ80_7AG0556890, gene-QOZ80_7BG0587830
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0029270.1, HORVU.MOREX.r3.2HG0149130.1 ... HORVU.MOREX.r3.3HG0237640.1, HORVU.MOREX.r3.5HG0517500.1
Poaceae	Lolium multiflorum	4	gene-QYE76_010323, gene-QYE76_042648, gene-QYE76_050807 ... gene-QYE76_061431
Poaceae	Oryza coarctata	6	Oco05G025740, Oco06G026610, Oco09G003750, Oco10G003700 ... Oco13G002100, Oco14G002200
Poaceae	Oryza sativa	3	LOC_Os03g57790.1, LOC_Os05g08960.1, LOC_Os07g07240.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G054300, gene-BS78_02G044400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105336, Pt_Chr0200083, Pt_Chr0303605, Pt_Chr0501608
Poaceae	Sporobolus alterniflorus	8	Chr01G003090, Chr03G005990, Chr05G011310, Chr0G004880 ... Chr12G034960, Chr19G017520, Chr24G000840, Chr28G001440
Poaceae	Thinopyrum elongatum	3	Tel2E01G455700, Tel3E01G193900, Tel5E01G671700
Poaceae	Triticum dicoccoides	7	gene_TRIDC1BG021200, gene_TRIDC2AG034200 ... gene_TRIDC2BG038730, gene_TRIDC3AG013910, gene_TRIDC3BG018390, gene_TRIDC5AG061990, gene_TRIDC5BG066150
Poaceae	Triticum aestivum	11	TraesCS1B02G140300.1, TraesCS1D02G121800.1 ... TraesCS2A02G247700.1, TraesCS2B02G270000.2, TraesCS2D02G248000.1, TraesCS3A02G112600.1, TraesCS3B02G131500.2, TraesCS3D02G114600.3, TraesCS5A02G429000.1, TraesCS5B02G431100.1, TraesCS5D02G437100.1
Poaceae	Zea mays	5	Zm00001eb060380_P001, Zm00001eb117140_P001 ... Zm00001eb213140_P002, Zm00001eb269840_P003, Zm00001eb300890_P001
Poaceae	Zoysia japonica	4	nbis-gene-16437, nbis-gene-26905, nbis-gene-35715 ... nbis-gene-6759
Poaceae	Zoysia macrostachya	4	Zma_g10091, Zma_g2599, Zma_g4781, Zma_g6035
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.830, evm.TU.LG03.280, evm.TU.LG09.2005 ... evm.TU.LG12.1426, evm.TU.LG13.333, evm.TU.LG21.39
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g01120
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.923, evm.TU.Scaffold_15_RagTag.659 ... evm.TU.Scaffold_17_RagTag.336
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14600, nbisL1-mrna-22990, nbisL1-mrna-28816
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1497, nbisL1-mrna-15565, nbisL1-mrna-316
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14860, nbisL1-mrna-15721, nbisL1-mrna-1787
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.343, evm.TU.utg000008l.356 ... evm.TU.utg000010l.45, evm.TU.utg000013l.233
Rhizophoraceae	Kandelia obovata	4	Maker00000829, Maker00002658, Maker00006743, Maker00008626
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11319, nbisL1-mrna-14548, nbisL1-mrna-7143 ... nbisL1-mrna-816
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-1532, nbisL1-mrna-15771, nbisL1-mrna-17839 ... nbisL1-mrna-8564
Salicaceae	Populus euphratica	4	populus_peu02348, populus_peu16124, populus_peu19348 ... populus_peu28520
Solanaceae	Lycium barbarum	4	gene-LOC132600798, gene-LOC132621219, gene-LOC132623275 ... gene-LOC132632666
Solanaceae	Solanum chilense	2	SOLCI000207800, SOLCI000466400
Solanaceae	Solanum pennellii	4	gene-LOC107008696, gene-LOC107011696, gene-LOC107014753 ... gene-LOC107023242
Tamaricaceae	Reaumuria soongarica	2	STRG.14046_chr05_+, gene_2081
Tamaricaceae	Tamarix chinensis	2	TC01G3273, TC03G0654
Zosteraceae	Zostera marina	2	Zosma06g29780.v3.1, Zosma06g29820.v3.1