Basic Information
Locus ID:
Ag8G01391
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
CAAX protease self-immunity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 186319695 | 186328773 | - | Ag8G01391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 37,125.74 Da | 44.43 | 111.72 | 0.45 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14270.1 | CAAX amino terminal protease family protein. | 0 |
| RefSeq | XP_017223424.1 | PREDICTED: uncharacterized protein LOC108199912 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YPX3 | CAAX amino terminal protease OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.766993 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.625296 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.834969 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.110645 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.757959 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.07247 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.989682 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.317879 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.120964 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.743862 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 41.994884 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.245728 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.988865 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 37.447754 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 38.193233 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 40.566326 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 36.830589 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 50.464825 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 52.773602 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 35.259991 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.950672 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.685362 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.176811 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.328705 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.854261 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 43.399586 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 47.906551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 49.857422 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 42.778481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.855463 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 26.892992 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.620836 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.893309 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.162733 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.473969 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.894514 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.22345 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.694153 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 68.050461 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 58.012367 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 104.523483 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.710571 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.405577 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.386274 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.953139 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.272257 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.867187 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 53.672066 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 44.789394 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 54.708416 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9345 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18236 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014100 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154040 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg28251, Sbi_jg34116, Sbi_jg43168, Sbi_jg43183 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015143 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31324, Sgl36177, Sgl36663, Sgl41466 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003807, gene:ENSEOMG00000015641 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0001320, CQ.Regalona.r1.6BG0001400 |
| Apiaceae | Apium graveolens | 1 | Ag8G01391 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G007320, COCNU_12G005730 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703133, gene-LOC103705897 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1361.V1.1, AsparagusV1_08.2429.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G25195 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G14270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008130m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g12620.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g005930.2N, BniB06g039270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0089 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0078 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g11580 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0903s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.241 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13317 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1899, AH08.1658, BH03.2024, BH08.1706, CH03.2247 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0535030, gene-QOZ80_6BG0488240 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0484540.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005051, gene-QYE76_031410, gene-QYE76_059223 |
| Poaceae | Oryza coarctata | 4 | Oco15G009200, Oco16G008620, Oco17G004730, Oco18G004790 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g33900.1, LOC_Os09g24670.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G181600, gene-BS78_07G146700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405385, Pt_Chr0503793 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr14G013800, Chr16G015180, Chr16G015190, Chr17G014640 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G372500, Tel7E01G314100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG036360, gene_TRIDC5BG038350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G228100.1, TraesCS5B02G226900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb041360_P002, Zm00001eb312490_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17032, nbis-gene-30857 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24115, Zma_g30304 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.256, evm.TU.LG12.1449, evm.TU.LG13.362 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.630 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26811 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20132 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15744 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.326 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002663 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11337 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17864 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641579 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018466 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14509 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3307 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04890.v3.1 |