halophFGD

Basic Information

Locus ID: Ag8G01299

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Type I inositol 1,4,5-trisphosphate 5-phosphatase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	164915778	164921620	-	Ag8G01299

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.16	146,211.58 Da	46.73	73.97	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09074	INPP5c	746	1092	1.21793E-101	-
Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	751	1083	1.7E-13	IPR005135
SUPERFAMILY	SSF50978	WD40 repeat-like	352	729	2.44E-23	IPR036322
SUPERFAMILY	SSF56219	DNase I-like	723	1109	1.02E-57	IPR036691
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	726	1124	1.3E-100	IPR036691
Gene3D	G3DSA:2.130.10.10	-	599	725	2.0E-5	IPR015943
Gene3D	G3DSA:2.130.10.10	-	331	560	3.9E-12	IPR015943
SMART	SM00320	WD40_4	607	640	37.0	IPR001680
SMART	SM00128	i5p_5	744	1098	1.2E-86	IPR000300
SMART	SM00320	WD40_4	430	468	0.071	IPR001680
SMART	SM00320	WD40_4	681	718	400.0	IPR001680
SMART	SM00320	WD40_4	383	421	5.9	IPR001680
SMART	SM00320	WD40_4	642	679	16.0	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	92	134	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	253	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	147	207	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	51	78	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1260	1335	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1260	1283	-	-

Gene Ontology

Biological Process:

GO:0046856 (phosphatidylinositol dephosphorylation)

Molecular Function:

GO:0003824 (catalytic activity) GO:0005515 (protein binding) GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K01099 (inositol polyphosphate 5-phosphatase INPP5B/F [EC:3.1.3.36])

Pathway:

ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko04070 (Phosphatidylinositol signaling system) map04070 (Phosphatidylinositol signaling system)

Reaction:

R04404 (1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 4-phosphate + Orthophosphate) R09827 (Phosphatidylinositol-3,4,5-trisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G05630.2	Endonuclease/exonuclease/phosphatase family protein. Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light lightstimulated increase in cytosolic calcium ion.
RefSeq	XP_017220537.1	PREDICTED: type I inositol polyphosphate 5-phosphatase 13-like [Daucus carota subsp. sativus]
Swiss-Prot	O80560	Type I inositol polyphosphate 5-phosphatase 12 OS=Arabidopsis thaliana OX=3702 GN=IP5P12 PE=1 SV=2
TrEMBL	A0A175YPA3	IPPc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027498 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.264454	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.526652	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.292067	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.250285	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.17042	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.142162	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.205962	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.396492	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.733208	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.465735	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.793002	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.838737	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.305493	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.448077	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.073813	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.022502	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.032301	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.108354	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.07841	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.144291	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.021203	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.097179	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.4157	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.082385	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.018362	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.099549	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.141304		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.192043		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.196434		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.240279		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.877594		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.504459		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.324302		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.229174		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.137382		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.248156	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.424277	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.344941	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.071479	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.01052	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.162908	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.057389	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.022167	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.016624	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.855612	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.219562	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.687671	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10935, jg13306, jg9842
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10156, gene_15743
Amaranthaceae	Atriplex hortensis	2	Ah005139, Ah019686
Amaranthaceae	Beta vulgaris	2	BVRB_3g059200, BVRB_4g074530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17390, Sbi_jg4979, Sbi_jg62040, Sbi_jg6737
Amaranthaceae	Salicornia europaea	2	Seu_jg12919, Seu_jg653
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003781, GOSA_00015543
Amaranthaceae	Suaeda glauca	3	Sgl00555, Sgl05568, Sgl29457
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000009152, gene:ENSEOMG00000011754 ... gene:ENSEOMG00000030495, gene:ENSEOMG00000031261, gene:ENSEOMG00000043375
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0011590, CQ.Regalona.r1.3BG0011710 ... CQ.Regalona.r1.4AG0002820, CQ.Regalona.r1.4BG0002950
Anacardiaceae	Pistacia vera	2	pistato.v30038890, pistato.v30221410
Apiaceae	Apium graveolens	4	Ag11G03690, Ag1G00046, Ag5G02750, Ag8G01299
Arecaceae	Cocos nucifera	3	COCNU_02G008130, COCNU_11G002360, scaffold003697G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103715204, gene-LOC103722592
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2040.V1.1, AsparagusV1_09.1682.V1.1 ... AsparagusV1_10.1295.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G14531, Ftri12G01313, Ftri17G01218
Brassicaceae	Arabidopsis thaliana	4	AT1G05630.1, AT1G65580.1, AT2G31830.2, AT2G43900.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001286m.g.v1.0, Thhalv10006606m.g.v1.0 ... Thhalv10016160m.g.v1.0, Thhalv10018032m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g04480.v2.2, Sp4g14110.v2.2, Sp4g25990.v2.2 ... Sp5g20500.v2.2
Brassicaceae	Brassica nigra	6	BniB02g002460.2N, BniB03g001430.2N, BniB03g043170.2N ... BniB06g020860.2N, BniB06g044930.2N, BniB08g028680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1376, Ceq07G0258
Casuarinaceae	Casuarina glauca	2	Cgl06G1442, Cgl07G0246
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g00160, gene.Cymno05g06360
Dunaliellaceae	Dunaliella salina	1	Dusal.0256s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g19970, gene.Thate07g00050
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG11.465, evm.TU.LG12.230
Plantaginaceae	Plantago ovata	2	Pov_00025077, Pov_00038862
Plumbaginaceae	Limonium bicolor	5	Lb0G37887, Lb1G04267, Lb3G21174, Lb3G21179, Lb7G33447
Poaceae	Echinochloa crus-galli	9	AH03.2483, AH07.1752, AH08.2122, BH03.2624, BH07.1738 ... BH08.2235, CH03.2833, CH07.1593, CH08.2417
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0130870, gene-QOZ80_2BG0186120 ... gene-QOZ80_6AG0540400, gene-QOZ80_6BG0493710, gene-QOZ80_8AG0637880, gene-QOZ80_8BG0666350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0391200.1, HORVU.MOREX.r3.5HG0492850.1 ... HORVU.MOREX.r3.7HG0682490.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006399, gene-QYE76_007935, gene-QYE76_022112 ... gene-QYE76_030171, gene-QYE76_030180
Poaceae	Oryza coarctata	4	Oco04G010650, Oco15G010510, Oco17G008570, Oco18G008650
Poaceae	Oryza sativa	3	LOC_Os02g27620.1, LOC_Os08g41270.1, LOC_Os09g32440.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G230200, gene-BS78_04G134500 ... gene-BS78_07G197100
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0201854, Pt_Chr0201855, Pt_Chr0403701, Pt_Chr0403706 ... Pt_Chr0701510, Pt_Chr0701518
Poaceae	Sporobolus alterniflorus	8	Chr06G011620, Chr0G001140, Chr10G014860, Chr11G007380 ... Chr14G016580, Chr15G013370, Chr20G001560, Chr29G001930
Poaceae	Thinopyrum elongatum	3	Tel4E01G385300, Tel5E01G444100, Tel7E01G451100
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG011340, gene_TRIDC4BG039110 ... gene_TRIDC5AG041860, gene_TRIDC5BG045790, gene_TRIDC7AG033000, gene_TRIDC7BG024130
Poaceae	Triticum aestivum	9	TraesCS4A02G082700.1, TraesCS4B02G221300.1 ... TraesCS4D02G221700.1, TraesCS5A02G278100.1, TraesCS5B02G277500.1, TraesCS5D02G285100.2, TraesCS7A02G255500.2, TraesCS7B02G151900.2, TraesCS7D02G253900.2
Poaceae	Zea mays	5	Zm00001eb035960_P003, Zm00001eb102240_P001 ... Zm00001eb174880_P001, Zm00001eb241060_P002, Zm00001eb317410_P001
Poaceae	Zoysia japonica	5	nbis-gene-10393, nbis-gene-19025, nbis-gene-19426 ... nbis-gene-42651, nbis-gene-55974
Poaceae	Zoysia macrostachya	5	Zma_g16318, Zma_g23287, Zma_g30580, Zma_g30581, Zma_g32832
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.792, evm.TU.LG05.2137, evm.TU.LG06.1545 ... evm.TU.LG08.1384, evm.TU.LG11.900, evm.TU.LG15.1489, evm.TU.LG22.282
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g12210, gene.Posoc02g34630
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1519, evm.TU.Scaffold_6_RagTag.543 ... evm.TU.Scaffold_3_RagTag.1563
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12811, nbisL1-mrna-15472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-15837, nbisL1-mrna-20489
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-22522, nbisL1-mrna-435, nbisL1-mrna-436
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000010l.464, evm.TU.utg000011l.302 ... evm.TU.utg000019l.289
Rhizophoraceae	Kandelia obovata	3	Maker00001975, Maker00006896, Maker00008896
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1177, nbisL1-mrna-13775, nbisL1-mrna-5393
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12932, nbisL1-mrna-20459, nbisL1-mrna-3705
Salicaceae	Populus euphratica	4	populus_peu06647, populus_peu20538, populus_peu22459 ... populus_peu23863
Solanaceae	Lycium barbarum	3	gene-LOC132604308, gene-LOC132609280, gene-LOC132616131
Solanaceae	Solanum chilense	2	SOLCI002246200, SOLCI003029900
Solanaceae	Solanum pennellii	5	gene-LOC107004647, gene-LOC107005773, gene-LOC107006083 ... gene-LOC107024969, gene-LOC107028043
Tamaricaceae	Reaumuria soongarica	3	STRG.28005_chr04_-, gene_12475, gene_6447
Tamaricaceae	Tamarix chinensis	3	TC01G1323, TC02G2976, TC12G1828
Zosteraceae	Zostera marina	3	Zosma01g32200.v3.1, Zosma03g17510.v3.1, Zosma04g26790.v3.1