Basic Information
Locus ID:
Ag8G01287
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 161147947 | 161165665 | - | Ag8G01287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 52,723.99 Da | 37.03 | 88.93 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 195 | 447 | 2.35694E-79 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 196 | 447 | 1.7E-50 | IPR001245 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 74 | 159 | 4.0E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 68 | 166 | 3.42E-22 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 201 | 447 | 5.93E-59 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 265 | 461 | 1.0E-46 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 46 | 179 | 1.6E-24 | IPR036770 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 182 | 264 | 2.1E-16 | - |
| SMART | SM00248 | ANK_2a | 66 | 97 | 480.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 101 | 130 | 5.5E-4 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 7 | 467 | 2.9E-194 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 185 | 451 | 35.085548 | IPR000719 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 101 | 133 | 12.275303 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 101 | 133 | 13.65098 | IPR002110 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 306 | 318 | - | IPR008266 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59830.1 | Integrin-linked protein kinase family. | 0 |
| RefSeq | XP_017222921.1 | PREDICTED: serine/threonine-protein kinase STY17-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4IS56 | Integrin-linked protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=ILK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3ZBC6 | serine/threonine-protein kinase STY17-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107784994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.38575 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.449645 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.651593 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.008487 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.45864 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.609874 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.149081 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.309715 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.203409 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.870039 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.9596 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.335823 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.719297 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.870844 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.456296 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.96494 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.222428 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.516708 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.047828 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 26.334713 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.619232 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.230257 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.683392 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.986887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.613468 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.845884 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.3587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.02867 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.229406 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.403599 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 28.699081 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 23.722055 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 31.527323 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.120935 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 39.895992 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.45109 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.170439 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 21.1698 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.07246 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.242088 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 25.892473 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 33.930698 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 79.341408 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 47.347458 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 48.644302 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.951372 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.97658 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.303047 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.558643 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.989305 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15759 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019668 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38465, Sbi_jg6572 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15353 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006450, GOSA_00006451 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01883, Sgl07061 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015218, gene:ENSEOMG00000031382 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0011350, CQ.Regalona.r1.3BG0011480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30247890 |
| Apiaceae | Apium graveolens | 2 | Ag5G02742, Ag8G01287 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G021880, scaffold002973G000160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706059, gene-LOC103715196 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.516.V1.1, AsparagusV1_10.1446.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01195, Ftri12G21829 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G31800.1, AT2G43850.1, AT3G59830.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001418m.g.v1.0, Thhalv10005933m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g14140.v2.2, Sp4g25920.v2.2, Sp5g03310.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g002380.2N, BniB01g012350.2N, BniB06g053860.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0273 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g11430, gene.Cymno08g02230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g07140, gene.Thate04g07150 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4890 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.496 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04256 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4151, AH07.2543, BH02.4166, BH07.2354, CH02.4201 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0042750, gene-QOZ80_1BG0092680 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0306300.2, HORVU.MOREX.r3.6HG0593300.1 |
| Poaceae | Oryza coarctata | 4 | Oco01G027060, Oco02G028140, Oco03G014930, Oco04G015420 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66860.2, LOC_Os02g39560.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G365000, gene-BS78_04G191200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204546, Pt_Chr0600183 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G021750, Chr05G030660, Chr09G012030, Chr0G023890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G636100, Tel6E01G423500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG057110, gene_TRIDC3BG064000 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G400600.1, TraesCS3B02G433600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb145050_P003, Zm00001eb246710_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18580, nbis-gene-28506 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11702, Zma_g16640 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1525, evm.TU.LG11.886 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g05760 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1556, evm.TU.Scaffold_6_RagTag.1167 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15490, nbisL1-mrna-1868 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13242, nbisL1-mrna-18248 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1005, nbisL1-mrna-2772 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.747, evm.TU.utg000019l.294 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001874, Maker00007966 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13555, nbisL1-mrna-5397 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12927, nbisL1-mrna-4086 |
| Salicaceae | Populus euphratica | 2 | populus_peu22477, populus_peu23872 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609294, gene-LOC132636045 |
| Solanaceae | Solanum chilense | 2 | SOLCI004391800, SOLCI005126000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005229, gene-LOC107026615 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12469, gene_6446 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1843 |
| Zosteraceae | Zostera marina | 2 | Zosma02g14270.v3.1, Zosma05g00830.v3.1 |