halophFGD

Basic Information

Locus ID: Ag8G01249

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	154774642	154776379	+	Ag8G01249

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.77	19,498.31 Da	36.89	85.81	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017227896.1	PREDICTED: replication protein A 70 kDa DNA-binding subunit D-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5BCK6	REPA_OB_2 domain-containing protein (Fragment) OS=Apium graveolens OX=4045 GN=AG4045_019195 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.319299	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.847712	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.784304	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.16122	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	8.658922	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	10.687578	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.532105	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.073465	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	6.409348	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	7.27262	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.713396	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.501759	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.18155	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.579688	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.131811	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.884483	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	7.878343	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.313922	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.403291	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	6.709764	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.667264	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.187313	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.257553	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.752085	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.321815	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.127621		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.608329		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.723508		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.675033	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.192168	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	12.672228	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.137631	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	9.605759	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.617066	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	28.786125	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.019052	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	31.589479	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.159671	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.197644	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.375674	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	35	Ag10G00978, Ag10G02928, Ag11G04457, Ag11G04458, Ag11G04459 ... Ag1G00662, Ag1G00669, Ag2G01094, Ag2G01909, Ag2G02160, Ag2G02654, Ag2G02694, Ag3G01029, Ag3G01704, Ag3G01706, Ag3G02041, Ag3G02117, Ag3G02128, Ag3G02129, Ag4G00897, Ag4G02210, Ag6G00374, Ag6G02506, Ag6G02751, Ag7G00009, Ag8G00916, Ag8G01248, Ag8G01249, Ag9G00385, Ag9G00493, Ag9G01066, Ag9G01857, Ag9G01859, AgUnG00472, AgUnG00987