Basic Information
Locus ID:
Ag8G01232
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA-directed RNA polymerases I, II, and III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 153051178 | 153053884 | - | Ag8G01232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 18,713.64 Da | 17.21 | 97.45 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03870 | RNA polymerase Rpb8 | 24 | 161 | 7.0E-50 | IPR005570 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 21 | 161 | 1.61E-43 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 23 | 163 | 2.5E-56 | - |
| SMART | SM00658 | rpol8neu | 19 | 161 | 2.6E-63 | IPR005570 |
| PIRSF | PIRSF000779 | RPB8 | 17 | 163 | 3.0E-49 | IPR005570 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54250.1 | RNA polymerase Rpb8. One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II and V; homologous to budding yeast RPB8. Probably redundant with At3g59600. | 0 |
| RefSeq | XP_017248479.1 | PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| O81097 | DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1 | 0 | |
| TrEMBL | A0A162ADW3 | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013218 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 74.180687 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 59.334755 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 44.365768 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 43.66996 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 41.326256 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.612148 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 46.314739 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 35.513256 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 83.896225 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 85.903969 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 92.463387 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 94.896049 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 79.234047 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 71.116722 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 39.361168 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 53.646984 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 58.609066 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 46.576836 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 51.636559 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 44.233917 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 58.575603 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 78.056137 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 81.473419 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 78.722801 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 75.101059 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 69.014969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 70.719536 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 57.510612 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 70.037933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 34.267155 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 36.455891 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 36.725368 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 65.37368 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 86.620308 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 60.519451 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 56.6777 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 45.471977 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 48.319965 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 37.588181 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.194185 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.257262 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 37.102531 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 66.474167 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 103.681915 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 98.601395 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 41.992722 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 94.068069 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 125.881172 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 122.250969 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 123.136703 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19054, jg26736 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10531 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004860 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g071190 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg18060, Sbi_jg38069, Sbi_jg62686 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1291, Seu_jg15642 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014341 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl04206, Sgl23799, Sgl28965, Sgl53803, Sgl59070 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008877, gene:ENSEOMG00000030669 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0000310, CQ.Regalona.r1.4BG0000350 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30211050, pistato.v30211090, pistato.v30245800 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G00368, Ag8G01232, Ag9G02255 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G005390 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103699115, gene-LOC120109498 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1212.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G22793, Ftri12G16834 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G54250.1, AT3G59600.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006298m.g.v1.0, Thhalv10029046m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g40680.v2.2, Sp5g03560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073910.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq06G1785, Ceq09G0969, Ceq09G0975, Ceq09G0999 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl06G1850, Cgl09G1061, Cgl09G1065, Cgl09G1087 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g06780 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0037s00018.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1133 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.300 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001366, Pov_00022558, Pov_00029298, Pov_00031222 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23492, Lb5G26779 |
| Poaceae | Echinochloa crus-galli | 2 | AH06.2833, BH06.2633 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0379410, gene-QOZ80_5BG0426440 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0113180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035564 |
| Poaceae | Oryza coarctata | 4 | Oco05G028780, Oco06G029820, Oco11G016130, Oco12G016420 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g62870.2, LOC_Os06g48230.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_06G274200, gene-BS78_10G249000, gene-BS78_K113000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401051, Pt_Chr0401090, Pt_Chr0401133 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000580, Chr10G021290, Chr11G001270, Chr12G032010 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G238800, Tel7E01G168800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG013300, gene_TRIDC2BG016240 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G110700.1, TraesCS2B02G129500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb210850_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40661, nbis-gene-9649 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31067, Zma_g33323 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG18.1117, evm.TU.LG18.1423, evm.TU.LG20.459 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28230 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1125, evm.TU.Scaffold_7_RagTag.1343 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15529, nbisL1-mrna-18416, nbisL1-mrna-20154 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13494, nbisL1-mrna-20199 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13304, nbisL1-mrna-971 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.283 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011798 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13582, nbisL1-mrna-9017 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4127 |
| Salicaceae | Populus euphratica | 3 | populus_peu16728, populus_peu16729, populus_peu37594 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132618750, gene-LOC132636672, gene-LOC132645136 |
| Solanaceae | Solanum chilense | 2 | SOLCI001011900, SOLCI001711700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009598, gene-LOC107012482 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4729_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2584 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20190.v3.1 |