Basic Information
Locus ID:
Ag8G01197
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
CR4
Description:
Serine threonine-protein kinase-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 141607203 | 141610761 | - | Ag8G01197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 101,245.80 Da | 44.03 | 84.85 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 535 | 804 | 4.45877E-83 | - |
| Pfam | PF00069 | Protein kinase domain | 529 | 798 | 6.5E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 509 | 802 | 3.64E-74 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 40 | 305 | 4.27E-25 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 46 | 181 | 3.2E-5 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 182 | 350 | 6.7E-15 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 501 | 606 | 3.4E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 607 | 809 | 6.9E-57 | - |
| SMART | SM00220 | serkin_6 | 529 | 806 | 3.0E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 529 | 806 | 37.106709 | IPR000719 |
| ProSiteProfiles | PS50050 | TNFR/NGFR family cysteine-rich region domain profile. | 364 | 411 | 9.7658 | IPR001368 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 535 | 557 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 654 | 666 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 900 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59420.1 | crinkly4. Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes. | 0 |
| RefSeq | XP_017220271.1 | PREDICTED: serine/threonine-protein kinase-like protein ACR4 [Daucus carota subsp. sativus] | 0 |
| Q9LX29 | Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana OX=3702 GN=ACR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YM94 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028458 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.360048 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.903295 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.957746 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.30591 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.65307 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.385911 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.09835 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.619604 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.386557 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.607212 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.253002 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.925465 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.088747 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.119983 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.0977 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.919481 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.629251 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.792668 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.345237 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.009734 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.804188 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.4779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.735931 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.158523 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.4842 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.702035 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.694366 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.511391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.425304 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.473516 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.220708 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.876407 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.862952 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.866816 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.760567 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.453854 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.618688 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.361671 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.0015 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.389236 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.833768 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.644712 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.161375 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.215824 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.213997 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.790743 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.551278 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.588979 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.619713 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.128031 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26150, jg28861, jg903, jg904 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15852 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019390 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g057150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15226, Sbi_jg56038 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26521 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006321 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01744, Sgl06903 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013488, gene:ENSEOMG00000030207 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009890, CQ.Regalona.r1.3BG0010050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30244150 |
| Apiaceae | Apium graveolens | 1 | Ag8G01197 |
| Arecaceae | Cocos nucifera | 1 | scaffold012795G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714553 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3403.V1.1, AsparagusV1_09.469.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G29151 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G59420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005780m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g03720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1449 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1542 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4252 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.188 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001627, Pov_00007373 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0021180, gene-QOZ80_1BG0070740 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0429770.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032608, gene-QYE76_048285 |
| Poaceae | Oryza coarctata | 2 | Oco05G018660, Oco06G019430 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g43670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G175700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G017540, Chr03G009120, Chr05G016490, Chr08G009440 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G529200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042080, gene_TRIDC7BG033180 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G301300.1.cds1, TraesCS7B02G201600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb406780_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21466 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10446 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1261 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1085 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15572 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9189 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-939 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.259 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007131 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22250 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4162 |
| Salicaceae | Populus euphratica | 2 | populus_peu22603, populus_peu24029 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643709 |
| Solanaceae | Solanum chilense | 1 | SOLCI006417900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004998 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11919 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2046 |
| Zosteraceae | Zostera marina | 1 | Zosma05g08820.v3.1 |