Basic Information
Locus ID:
Ag8G01190
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 138654834 | 138670257 | + | Ag8G01190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 56,339.47 Da | 45.81 | 74.93 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 300 | 373 | 2.30162E-18 | - |
| Pfam | PF00789 | UBX domain | 296 | 373 | 3.2E-16 | IPR001012 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 8 | 116 | 2.91E-10 | IPR036249 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 281 | 374 | 2.07E-14 | IPR029071 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 11 | 118 | 3.3E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 289 | 375 | 1.2E-20 | - |
| SMART | SM00166 | ubx_3 | 291 | 374 | 8.4E-7 | IPR001012 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 294 | 372 | 17.840815 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 482 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43210.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_017223262.1 | PREDICTED: plant UBX domain-containing protein 11 [Daucus carota subsp. sativus] | 0 |
| Q9ZW74 | Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUX11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YMT7 | UBX domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027534 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 34.946259 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.081816 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.927116 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 32.991737 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.800953 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 41.198479 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 37.286545 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 38.279419 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.666729 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.711329 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.925779 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.253971 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.085236 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.119833 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.394289 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.687 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.250023 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.982843 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.093035 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.594881 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.080711 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.691402 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.629795 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.505117 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.404339 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.211195 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.060789 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.561924 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.431866 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.849781 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.658691 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.03287 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.358934 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.269547 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.517822 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.975948 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.307523 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.229571 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.517302 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.45779 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.441692 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 56.224449 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 46.568806 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.456667 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 41.728046 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 58.41975 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.399647 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.728035 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.033075 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.478823 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10978 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30243470 |
| Apiaceae | Apium graveolens | 1 | Ag8G01190 |
| Arecaceae | Cocos nucifera | 1 | scaffold020456G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717528 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1033.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G25455 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G43210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001393m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g25330.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g002960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0943 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1025 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g10240 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021419 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1115, CH04.1237 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0677360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0341630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063877 |
| Poaceae | Oryza coarctata | 2 | Oco21G004670, Oco22G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g18880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G135200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107741 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr31G003930, Chr31G003950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G118600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG038050, gene_TRIDC4BG011370 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G241200.1, TraesCS4B02G073900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198990_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23415, nbis-gene-43424 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17824, Zma_g18695 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15600 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1765, nbisL1-mrna-5729 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2683 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.367 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001628 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12296 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12818 |
| Salicaceae | Populus euphratica | 1 | populus_peu22649 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610436 |
| Solanaceae | Solanum chilense | 1 | SOLCI001209100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031436 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16550.v3.1 |