Basic Information
Locus ID:
Ag8G01184
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 136109583 | 136119212 | + | Ag8G01184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 42,705.96 Da | 53.78 | 75.66 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 230 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04560.1 | 0 | |
| RefSeq | XP_017223046.1 | PREDICTED: uncharacterized protein LOC108199642 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YLU4 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028379 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 37.071899 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 83.201675 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 63.732414 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 65.891037 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 67.03746 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 46.59164 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 46.907291 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 47.856113 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.826889 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.519964 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.683046 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 35.629265 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.447533 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.11408 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 55.442886 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 43.661434 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 68.829094 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 55.018997 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 53.402485 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 43.08231 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 54.131973 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 147.229752 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 144.805786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 73.211258 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 83.05851 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 92.631287 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 61.787315 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 79.617256 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 78.78965 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.447666 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 31.378153 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.352398 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.243446 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.260063 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.001036 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.117441 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 28.392918 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 20.294958 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.437245 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.280042 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.755852 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 107.891273 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 54.382591 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 122.288788 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 138.106537 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 106.019447 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 105.989662 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 68.558098 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 86.157593 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 94.554413 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5332 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9949 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006310 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16645, Sbi_jg61211, Sbi_jg61212 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22942 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008140 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24937, Sgl30081 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009468, gene:ENSEOMG00000028840 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0011440, CQ.Regalona.r1.4BG0011630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30183780 |
| Apiaceae | Apium graveolens | 1 | Ag8G01184 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G008460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705469 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.678.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G13037, FtriNA20284 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020805m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g058990.2N, BniB07g033520.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2298 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05760 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0197s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2217 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040071 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21734 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.3974, BH07.3790 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0150810, gene-QOZ80_2BG0206210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0630420.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G025580, Oco04G026060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G323000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604452, Pt_Chr0604513 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G026530, Chr13G000600, Chr14G008790, Chr20G009560 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G718600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG054150, gene_TRIDC6AG058600 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G398500.1, TraesCS6B02G438500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb191150_P001, Zm00001eb259140_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8287 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14732 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1789, evm.TU.LG16.1288, evm.TU.LG20.1282 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09850 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1914 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3324 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12391 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13801 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.142 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12896 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16275 |
| Salicaceae | Populus euphratica | 1 | populus_peu15960 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614151 |
| Solanaceae | Solanum chilense | 1 | SOLCI000788300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002945 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.27256_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1986 |
| Zosteraceae | Zostera marina | 2 | Zosma03g15960.v3.1, Zosma03g16020.v3.1 |