Basic Information
Locus ID:
Ag8G01171
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcriptional regulator
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 131799112 | 131834509 | + | Ag8G01171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 166,180.03 Da | 43.84 | 81.16 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11726 | ADDz_ATRX | 434 | 530 | 5.42281E-35 | - |
| CDD | cd18793 | SF2_C_SNF | 1047 | 1198 | 3.09368E-48 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 682 | 984 | 2.1E-51 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1065 | 1187 | 9.8E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 648 | 915 | 3.04E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 921 | 1285 | 1.19E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 634 | 915 | 7.0E-76 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 926 | 1273 | 2.3E-76 | IPR027417 |
| SMART | SM00490 | helicmild6 | 1090 | 1187 | 1.4E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 657 | 878 | 2.6E-19 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1065 | 1235 | 16.329849 | IPR001650 |
| ProSiteProfiles | PS51533 | ADD domain profile. | 426 | 556 | 11.73443 | IPR025766 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 683 | 866 | 15.796787 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 45 | - | - |
| Coils | Coil | Coil | 99 | 119 | - | - |
| Coils | Coil | Coil | 48 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08600.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_017222629.1 | PREDICTED: protein CHROMATIN REMODELING 20 [Daucus carota subsp. sativus] | 0 |
| F4HW51 | Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2 | 0 | |
| TrEMBL | A0A175YMH8 | ATP-dependent helicase ATRX OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028378 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.03764 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.319214 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.701344 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.655987 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.613434 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.208456 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.572447 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.557089 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.804117 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.496605 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.731806 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.917158 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.317116 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.562227 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.61389 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.693722 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.070962 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.991204 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.8706 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.342213 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.435328 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.029208 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.945544 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.842484 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.198897 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.314276 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.979358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.565227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.102642 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.976471 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.616566 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.967677 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.964754 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.746464 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.0136 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.973442 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.802127 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.962055 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.749155 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.724948 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.884781 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.324658 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.787703 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.926113 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.697868 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.774521 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.881302 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.256767 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.081646 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.883877 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2716 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005595 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g077440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17305, Sbi_jg61941 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg561 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015470 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24355, Sgl24363, Sgl29528, Sgl29539 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009165, gene:ENSEOMG00000028688 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0006760, CQ.Regalona.r1.4BG0006890 |
| Apiaceae | Apium graveolens | 1 | Ag8G01171 |
| Arecaceae | Cocos nucifera | 1 | scaffold001442G000100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720147 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.300.V1.1, AsparagusV1_04.301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G15386 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08600.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006555m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g07260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g004270.2N, BniB04g031090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2408 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2527 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-7901, nbisL1-mrna-7903 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012773 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06456 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.2180, CH01.2274 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0126760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011271 |
| Poaceae | Oryza coarctata | 2 | Oco19G005350, Oco20G005280 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G215300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0502490, Pt_Chr0502493, Pt_Chr0502494 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013430, Chr15G016210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G267300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG021840, gene_TRIDC1BG025970 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G144000.3, TraesCS1B02G161400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046650_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21251 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13338 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.1131 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g06480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.331 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7899 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8969 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5379 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.217 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011053 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7743 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-300 |
| Salicaceae | Populus euphratica | 4 | populus_peu15998, populus_peu19501, populus_peu25237 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616152 |
| Solanaceae | Solanum chilense | 1 | SOLCI002257600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017879 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17982 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0883 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24490.v3.1 |