Basic Information
Locus ID:
Ag8G01101
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 119108370 | 119110868 | + | Ag8G01101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 18,965.74 Da | 58.73 | 102.75 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61730.1 | reduced male fertility. Encodes a nuclear localized F-box protein that is involved in tapetal layer degeneration and pollen development. Interacts with ASK1 and that interaction is mediated by the F-box domain. | 0 |
| RefSeq | XP_017234542.1 | PREDICTED: probable F-box protein At3g61730 [Daucus carota subsp. sativus] | 0 |
| Q9M365 | Probable F-box protein At3g61730 OS=Arabidopsis thaliana OX=3702 GN=RMF PE=1 SV=2 | 0 | |
| TrEMBL | A0A166E5V7 | WAK_assoc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006973 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.324407 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.111198 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.630371 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.509785 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.030553 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.16305 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.041216 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.202584 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.622601 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.463488 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.319824 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.139788 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.016633 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.158588 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.679167 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.122648 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.784747 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.121308 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.291805 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.282111 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.873664 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.996978 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.371532 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.517144 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.269202 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.274085 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.065891 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.71352 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.476891 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.796494 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.368947 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.487252 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.962124 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.097467 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.863439 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23547 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3960, Sbi_jg49173 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6070 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000577 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10914, Sgl16268 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015309, gene:ENSEOMG00000034785 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0002120, CQ.Regalona.r1.1AG0003620 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005770 |
| Apiaceae | Apium graveolens | 3 | Ag11G04909, Ag6G01553, Ag8G01101 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G002940 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703047, gene-LOC120108259 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2600.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13570 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G61730.1, AT3G62500.1, AT5G36000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006430m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g01640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g052820.2N, BniB06g061850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1267 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1308 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.707 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016587, Pov_00016588 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03662 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.176, AH02.532, BH02.168, CH02.194, CH05.1612 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0001640, gene-QOZ80_1AG0007050 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051354 |
| Poaceae | Oryza coarctata | 2 | Oco01G005200, Oco02G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G015000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204954, Pt_Chr0206802 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G000210, Chr08G000240, Chr14G016870, Chr21G015800 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G260200, Tel4E01G032500, Tel4E01G284600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1BG032410, gene_TRIDC3AG019130 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G144000.1, TraesCS3B02G170600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb119810_P001, Zm00001eb308970_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24329 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9552 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1277, evm.TU.LG24.1276 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc09g09100, gene.Posoc09g09180, gene.Posoc09g09190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.602 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.207 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017768 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1704 |
| Salicaceae | Populus euphratica | 2 | populus_peu27565, populus_peu31562 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599972 |
| Solanaceae | Solanum chilense | 1 | SOLCI004966500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_732 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1954 |
| Zosteraceae | Zostera marina | 1 | Zosma05g06460.v3.1 |