Basic Information
Locus ID:
Ag8G01086
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 117449070 | 117470350 | + | Ag8G01086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 70,495.59 Da | 54.30 | 70.11 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05773 | RWD domain | 118 | 253 | 2.9E-22 | IPR006575 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 380 | 438 | 4.2E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 479 | 518 | 2.4E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 560 | 612 | 3.88E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 381 | 442 | 7.77E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 472 | 531 | 2.12E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 308 | 391 | 2.09E-16 | - |
| SUPERFAMILY | SSF54495 | UBC-like | 117 | 252 | 1.19E-19 | IPR016135 |
| Gene3D | G3DSA:1.20.120.1750 | - | 459 | 555 | 1.2E-14 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 114 | 258 | 3.9E-27 | IPR016135 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 395 | 2.6E-19 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 467 | 528 | 0.03 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 380 | 438 | 1.5E-7 | IPR002867 |
| SMART | SM00184 | ring_2 | 563 | 592 | 0.3 | IPR001841 |
| SMART | SM00184 | ring_2 | 485 | 514 | 5.7 | IPR001841 |
| SMART | SM00184 | ring_2 | 312 | 359 | 0.0063 | IPR001841 |
| SMART | SM00591 | RWD2001b | 122 | 257 | 4.1E-23 | IPR006575 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 360 | 10.305834 | IPR001841 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 122 | 257 | 16.472067 | IPR006575 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 308 | 532 | 24.24893 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 329 | 338 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32340.1 | NDR1/HIN1-like 8. Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine. | 0 |
| RefSeq | XP_017228633.1 | PREDICTED: E3 ubiquitin-protein ligase RNF14 [Daucus carota subsp. sativus] | 0 |
| Q9JI90 | E3 ubiquitin-protein ligase RNF14 OS=Mus musculus OX=10090 GN=Rnf14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YAW7 | E3 ubiquitin-protein ligase RNF14 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_032084 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.429006 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.705414 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.647791 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.040879 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.541499 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.576062 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.74227 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.172337 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.169443 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.673094 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.759357 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.939019 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.112053 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.924715 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.487867 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.189294 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.222382 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.664524 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.738589 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.54326 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.211144 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.237433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.8241 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.197506 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.367239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.48908 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.995552 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.192966 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.528321 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.262853 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.412632 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.092866 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.058067 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.06551 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.924653 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.97234 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.492279 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.378587 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.438461 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.447249 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.549135 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.12578 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.901431 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.730963 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.786865 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.009342 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.794564 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.662352 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.324778 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.599421 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37360 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15035 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004310, Ah004313, Ah004315, Ah004317, Ah004320, Ah004321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106710 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15825, Sbi_jg24534, Sbi_jg56621, Sbi_jg8383 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11664, Seu_jg13822 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010865, GOSA_00010866 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl22012, Sgl22013, Sgl22124, Sgl22125, Sgl27280, Sgl51287 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005118, gene:ENSEOMG00000022460 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0002260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30029780 |
| Apiaceae | Apium graveolens | 1 | Ag8G01086 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714585 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.108.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G09830 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G32340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007022m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g28560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g035510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0292 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0304, Cgl01G0308 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g05620 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.823 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003048, Pov_00003050, Pov_00003052 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24266 |
| Poaceae | Echinochloa crus-galli | 11 | AH07.3080, AH07.3081, AH09.2149, AH09.2150, BH07.2902 ... |
| Poaceae | Eleusine coracana subsp. coracana | 11 | gene-QOZ80_2AG0141730, gene-QOZ80_2BG0197310 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0197380.1, HORVU.MOREX.r3.2HG0197430.1 ... |
| Poaceae | Lolium multiflorum | 17 | gene-QYE76_008070, gene-QYE76_039445, gene-QYE76_039446 ... |
| Poaceae | Oryza coarctata | 7 | Oco03G018740, Oco04G019470, Oco07G014620, Oco07G014630 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os02g46720.1, LOC_Os02g46730.1, LOC_Os02g46740.1 ... |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_04G231300, gene-BS78_06G211200 ... |
| Poaceae | Puccinellia tenuiflora | 11 | Pt_Chr0301531, Pt_Chr0301532, Pt_Chr0301534, Pt_Chr0301536 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr15G006090, Chr25G004200, Chr25G004220, Chr30G004050 ... |
| Poaceae | Thinopyrum elongatum | 15 | Tel1E01G107900, Tel1E01G229000, Tel2E01G755200 ... |
| Poaceae | Triticum dicoccoides | 14 | gene_TRIDC2AG063830, gene_TRIDC2AG063840 ... |
| Poaceae | Triticum aestivum | 30 | TraesCS1B02G065800.1, TraesCS1B02G476700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb072220_P001, Zm00001eb251320_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20351 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.694, evm.TU.LG17.706 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g00730, gene.Posoc07g00770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.547 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17806 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11632 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8199 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.56 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018445 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16251 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10564 |
| Salicaceae | Populus euphratica | 1 | populus_peu03210 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609713 |
| Solanaceae | Solanum chilense | 1 | SOLCI002820400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028660 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15512 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0488 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02750.v3.1 |