halophFGD

Basic Information

Locus ID: Ag8G01072

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box protein At4g22030

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	114326027	114327589	-	Ag8G01072

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.98	46,837.20 Da	43.63	91.91	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14476	Petal formation-expressed	94	413	1.4E-148	IPR027949
MobiDBLite	mobidb-lite	consensus disorder prediction	64	85	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	64	84	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G04480.1
RefSeq	XP_017220810.1	PREDICTED: probable F-box protein At4g22030 [Daucus carota subsp. sativus]
Swiss-Prot	O65451	Probable F-box protein At4g22030 OS=Arabidopsis thaliana OX=3702 GN=At4g22030 PE=4 SV=1
TrEMBL	A0A161XJB3	F-box protein At4g22030 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008166 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.204922	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.210024	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.340446	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.095997	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.398316	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.528557	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.650631	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.52345	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.119067	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.871155	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.634005	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.200104	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.425995	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.091107	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.028775	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.51324	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.604786	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.249182	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.204161	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.873157	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.400396	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.345454	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.692573	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.570709	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.706459	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.688953	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.851775	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.20997	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.914805	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.095385		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.046166		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.56303		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.213753		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.419491		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.760782		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.117859		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.887076		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.525058	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.378247	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.337642	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	47.160294	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	43.834095	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	25.241858	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	8.761189	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	38.709808	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	19.741386	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.559133	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.634365	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.921163	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg20436, jg21862, jg21863, jg24795, jg38595
Aizoaceae	Mesembryanthemum crystallinum	1	gene_77
Amaranthaceae	Atriplex hortensis	3	Ah017489, Ah017490, Ah017496
Amaranthaceae	Beta vulgaris	3	BVRB_8g185870, BVRB_8g185880, BVRB_8g185900
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg40180, Sbi_jg40181, Sbi_jg40191, Sbi_jg50158 ... Sbi_jg50159, Sbi_jg50164
Amaranthaceae	Salicornia europaea	3	Seu_jg1766, Seu_jg1767, Seu_jg1770
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011351, GOSA_00011358, GOSA_00011360
Amaranthaceae	Suaeda glauca	5	Sgl46345, Sgl46346, Sgl46355, Sgl51063, Sgl51064
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000033600, gene:ENSEOMG00000046416
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.8AG0001490, CQ.Regalona.r1.8AG0001500 ... CQ.Regalona.r1.8BG0001390, CQ.Regalona.r1.8BG0001400, CQ.Regalona.r1.8BG0001420
Anacardiaceae	Pistacia vera	14	pistato.v30094850, pistato.v30094870, pistato.v30094880 ... pistato.v30094900, pistato.v30156400, pistato.v30156430, pistato.v30196920, pistato.v30196930, pistato.v30196940, pistato.v30196950, pistato.v30196970, pistato.v30196990, pistato.v30197000, pistato.v30197010
Apiaceae	Apium graveolens	6	Ag6G00886, Ag6G00887, Ag7G00590, Ag7G00591, Ag8G01071 ... Ag8G01072
Arecaceae	Cocos nucifera	5	COCNU_02G001650, contig69235210G000010 ... contig69235210G000020, scaffold014375G000040, scaffold076645G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103700463, gene-LOC103700599, gene-LOC103709619
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2055.V1.1, AsparagusV1_01.2057.V1.1 ... AsparagusV1_06.999.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G26149, Ftri18G31499
Brassicaceae	Arabidopsis thaliana	2	AT4G04480.1, AT4G22030.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10026894m.g.v1.0, Thhalv10028702m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g04420.v2.2
Brassicaceae	Brassica nigra	3	BniB08g034470.2N, BniB08g037910.2N, BniB08g047920.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G1327, Ceq04G1626, Ceq04G1627, Ceq04G1628, Ceq04G1629 ... Ceq04G1630, Ceq04G1631, Ceq04G1632, Ceq05G0969
Casuarinaceae	Casuarina glauca	3	Cgl01G1482, Cgl04G1802, Cgl05G0968
Malvaceae	Hibiscus hamabo Siebold & Zucc.	10	nbisL1-mrna-1023, nbisL1-mrna-1024, nbisL1-mrna-3864 ... nbisL1-mrna-3865, nbisL1-mrna-3869, nbisL1-mrna-3870, nbisL1-mrna-3872, nbisL1-mrna-3873, nbisL1-mrna-8074, nbisL1-mrna-8075
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG12.1153, evm.TU.LG12.1154, evm.TU.LG12.1155 ... evm.TU.LG12.1156, evm.TU.LG12.1158, evm.TU.LG12.1159
Plantaginaceae	Plantago ovata	2	Pov_00005956, Pov_00005959
Plumbaginaceae	Limonium bicolor	1	Lb2G13972
Poaceae	Echinochloa crus-galli	7	AH01.2433, AH07.899, AH07.900, BH07.1024, BH07.1025 ... CH07.781, CH07.782
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0106760, gene-QOZ80_2AG0106770 ... gene-QOZ80_2BG0160290
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.6HG0557290.1.CDS1 ... HORVU.MOREX.r3.6HG0570020.1.CDS1, HORVU.MOREX.r3.7HG0651390.1.CDS1, HORVU.MOREX.r3.7HG0651400.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_021742, gene-QYE76_021744, gene-QYE76_021746 ... gene-QYE76_021747, gene-QYE76_021749, gene-QYE76_034730, gene-QYE76_048715
Poaceae	Oryza coarctata	4	Oco03G005950, Oco03G005970, Oco04G006180, Oco04G006190
Poaceae	Oryza sativa	6	LOC_Os02g13190.1, LOC_Os02g13220.1, LOC_Os02g13260.1 ... LOC_Os02g28590.1, LOC_Os05g04570.1, LOC_Os12g01970.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G092200, gene-BS78_04G092300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0605798, Pt_Chr0605799
Poaceae	Sporobolus alterniflorus	7	Chr01G026970, Chr06G032500, Chr0G010000, Chr0G010010 ... Chr11G010120, Chr15G023900, Chr15G023910
Poaceae	Thinopyrum elongatum	9	Tel6E01G244000, Tel6E01G244100, Tel6E01G244200 ... Tel6E01G311900, Tel7E01G212500, Tel7E01G212700, Tel7E01G212900, Tel7E01G213000, Tel7E01G213100
Poaceae	Triticum dicoccoides	9	gene_TRIDC6AG014460, gene_TRIDC6AG014470 ... gene_TRIDC6AG021060, gene_TRIDC6BG019890, gene_TRIDC6BG019920, gene_TRIDC6BG026900, gene_TRIDC7AG012330, gene_TRIDC7BG000690, gene_TRIDC7BG000700
Poaceae	Triticum aestivum	15	TraesCS4A02G403800.1.cds1, TraesCS6A02G110500.1.cds1 ... TraesCS6A02G110600.1.cds1, TraesCS6A02G151600.1.cds1, TraesCS6B02G138800.1.cds1, TraesCS6B02G138900.1.cds1, TraesCS6B02G179700.1.cds1, TraesCS6D02G099200.1.cds1, TraesCS6D02G099300.1.cds1, TraesCS6D02G141600.1.cds1, TraesCS7A02G105600.1.cds1, TraesCS7A02G105800.1.cds1, TraesCS7B02G004000.1.cds1, TraesCS7B02G004500.1.cds1, TraesCS7B02G004600.1.cds1
Poaceae	Zea mays	3	Zm00001eb205040_P001, Zm00001eb239750_P001 ... Zm00001eb239760_P001
Poaceae	Zoysia japonica	2	nbis-gene-34288, nbis-gene-34291
Poaceae	Zoysia macrostachya	2	Zma_g15453, Zma_g15454
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.1903, evm.TU.LG01.1904, evm.TU.LG01.1905 ... evm.TU.LG14.1090, evm.TU.LG14.1091, evm.TU.LG18.895, evm.TU.LG20.968
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g12050
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_12_RagTag.1013, evm.TU.Scaffold_13_RagTag.39 ... evm.TU.Scaffold_13_RagTag.41
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-23964, nbisL1-mrna-29781, nbisL1-mrna-29782 ... nbisL1-mrna-29784
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-5445, nbisL1-mrna-8179
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20767, nbisL1-mrna-20769, nbisL1-mrna-21714
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000015l.10, add.evm.TU.utg000015l.9 ... add.evm.TU.utg000027l.10
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-19176, nbisL1-mrna-19177, nbisL1-mrna-20986 ... nbisL1-mrna-22791, nbisL1-mrna-22792, nbisL1-mrna-23107
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-23287, nbisL1-mrna-23418, nbisL1-mrna-23420 ... nbisL1-mrna-23422
Salicaceae	Populus euphratica	8	populus_peu10370, populus_peu10371, populus_peu10372 ... populus_peu10374, populus_peu10375, populus_peu10376, populus_peu18466, populus_peu18467
Solanaceae	Lycium barbarum	9	gene-LOC132622546, gene-LOC132622640, gene-LOC132622797 ... gene-LOC132622798, gene-LOC132622862, gene-LOC132623023, gene-LOC132623025, gene-LOC132623068, gene-LOC132623400
Solanaceae	Solanum chilense	3	SOLCI005821200, SOLCI005821300, SOLCI005821400
Solanaceae	Solanum pennellii	3	gene-LOC107010110, gene-LOC107010799, gene-LOC107010883
Tamaricaceae	Reaumuria soongarica	6	gene_409, gene_410, gene_411, gene_412, gene_413, gene_414
Tamaricaceae	Tamarix chinensis	2	TC08G0098, TC08G0099
Zosteraceae	Zostera marina	1	Zosma01g22770.v3.1