Basic Information
Locus ID:
Ag8G01032
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein 89 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 107758102 | 107763423 | + | Ag8G01032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 42,424.85 Da | 49.59 | 72.67 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 34 | 349 | 2.75E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 157 | 3.7E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 158 | 377 | 3.7E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 64 | 102 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 189 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 145 | 2.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 72 | 105 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 72 | 111 | 10.608706 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47790.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017231740.1 | PREDICTED: WD repeat-containing protein 89 homolog [Daucus carota subsp. sativus] | 0 |
| Q944S2 | WD repeat-containing protein GTS1 OS=Arabidopsis thaliana OX=3702 GN=GTS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166D9G1 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005798 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.76178 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.967609 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.369377 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.571181 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.220226 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.441951 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.343597 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.132559 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.275015 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.783207 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.819826 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.501343 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.601898 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.518978 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.500807 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.134157 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.66011 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.074089 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.592548 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.864258 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.914795 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.817188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.817368 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 31.154638 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.158405 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.144751 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.909298 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.041435 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.428532 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.125528 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.16252 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.654512 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.726252 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 25.201496 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.807726 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.584843 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.92943 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.94058 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.540858 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.512538 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.872195 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.061792 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.06847 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 38.484043 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.467068 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.198011 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.356718 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.267084 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 38.351089 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 36.275635 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8883 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5205 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029981 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164680 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg1375, Sbi_jg35197, Sbi_jg35198 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3354 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003535 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73713, Sgl77212 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006818, gene:ENSEOMG00000033977 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0013180, CQ.Regalona.r1.7BG0015120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30009240 |
| Apiaceae | Apium graveolens | 2 | Ag8G01032, AgUnG01463 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G009010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721567 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1320.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G16212 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G47790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001494m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g29720.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g000070.2N, BniB07g000280.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0948 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0974 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g06170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0177s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g20400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6263, nbisL1-mrna-9627 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024864 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G21509, Lb4G21519, Lb4G21525 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3281, BH05.3308, CH05.3411 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0388070, gene-QOZ80_5BG0436770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0634460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016899 |
| Poaceae | Oryza coarctata | 2 | Oco23G005800, Oco24G004780 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g19590.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G044900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404065, Pt_Chr0404084 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G014500, Chr27G001210 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G736900, Tel5E01G327900, Tel7E01G011000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG070750, gene_TRIDC7AG000300 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G498400.1, TraesCS7A02G002100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb157470_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12469 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25732 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.139, evm.TU.LG04.616 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g11640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.819 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21406 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19960 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18479 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.583 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009395 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1562 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5229 |
| Salicaceae | Populus euphratica | 2 | populus_peu27243, populus_peu31231 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608937 |
| Solanaceae | Solanum chilense | 1 | SOLCI001155500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031685 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.706_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0355 |
| Zosteraceae | Zostera marina | 2 | Zosma06g29870.v3.1, Zosma06g29880.v3.1 |