Basic Information
Locus ID:
Ag8G01009
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
PSR
Description:
(2R)-phospho-3-sulfolactate synthase (ComA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 104209032 | 104212547 | + | Ag8G01009 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 33,337.86 Da | 43.92 | 76.18 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02679 | (2R)-phospho-3-sulfolactate synthase (ComA) | 14 | 278 | 3.2E-74 | IPR003830 |
| SUPERFAMILY | SSF102110 | (2r)-phospho-3-sulfolactate synthase ComA | 13 | 276 | 3.01E-66 | IPR036112 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 12 | 282 | 3.5E-73 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21320.1 | Aldolase-type TIM barrel family protein. Encodes heat-stress-associated 32-kD protein. Up-regulated by heat shock. Thermotolerance in a knockout mutant was compromised following a long recovery period (> 24 h) after acclimation heat shock treatment. | 0 |
| RefSeq | XP_017220608.1 | PREDICTED: protein HEAT-STRESS-ASSOCIATED 32 [Daucus carota subsp. sativus] | 0 |
| Q8GWL1 | Protein HEAT-STRESS-ASSOCIATED 32 OS=Arabidopsis thaliana OX=3702 GN=HSA32 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YMT5 | Protein HEAT-STRESS-ASSOCIATED 32 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028150 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 513.713745 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 380.617249 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 689.989685 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 616.720093 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 546.406128 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 666.620911 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 520.836731 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 780.268311 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 41.592411 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 79.924454 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.791447 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.722778 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.850155 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.938168 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.463566 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 27.409395 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 31.646568 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.828218 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 36.176758 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.624569 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.446053 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.795685 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.970474 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.300421 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.760077 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 36.479889 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 43.230118 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.527754 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.525196 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.183689 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.023669 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.046807 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 72.590508 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 67.787979 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 91.817375 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 25.684784 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.078411 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 25.636843 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.585621 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.991522 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.179904 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.583935 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.267933 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.048117 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.716391 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 37.040459 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.663115 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.642162 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.303379 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.203966 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20377 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22123 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017754 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40263, Sbi_jg50262, Sbi_jg50263 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1849 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011423 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41644, Sgl46443 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009098, gene:ENSEOMG00000030161 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0002980, CQ.Regalona.r1.8BG0003060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30075320 |
| Apiaceae | Apium graveolens | 1 | Ag8G01009 |
| Arecaceae | Cocos nucifera | 1 | scaffold006130G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724328 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2592.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24514 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025914m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19390.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g070740.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1707 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g18970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.628 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25051 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2727, BH06.2525, CH06.2824 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0548410, gene-QOZ80_6BG0502110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0732330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035922 |
| Poaceae | Oryza coarctata | 2 | Oco11G015390, Oco12G015710 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g46900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G233900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401199 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G009880, Chr15G023510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G760200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG056670, gene_TRIDC7AG062490 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G451100.1, TraesCS7B02G351000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225360_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40591 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33267 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.778, evm.TU.LG20.1117 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.124 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29633 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10203 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20824 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.83 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015606 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6012 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16970 |
| Salicaceae | Populus euphratica | 2 | populus_peu10193, populus_peu18345 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621745 |
| Solanaceae | Solanum chilense | 1 | SOLCI007250600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009558 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17598 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1151 |