halophFGD

Basic Information

Locus ID: Ag8G00963

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the universal ribosomal protein uL5 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	96560343	96561942	-	Ag8G00963

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.94	20,801.83 Da	31.96	82.36	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00281	Ribosomal protein L5	9	62	1.2E-20	IPR031310
Pfam	PF00673	ribosomal L5P family C-terminus	66	164	9.2E-21	IPR031309
SUPERFAMILY	SSF55282	RL5-like	9	173	4.24E-57	IPR022803
Gene3D	G3DSA:3.30.1440.10	-	2	177	6.3E-73	IPR022803
PIRSF	PIRSF002161	RPL5p_RPL5a_RPL11e_RPL5o	1	172	2.6E-42	IPR002132
ProSitePatterns	PS00358	Ribosomal protein L5 signature.	39	55	-	IPR020929

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02868 (large subunit ribosomal protein L11e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G42740.1	ribosomal protein large subunit 16A. encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.
RefSeq	XP_017243210.1	PREDICTED: 60S ribosomal protein L11 [Daucus carota subsp. sativus]
Swiss-Prot	P42795	Large ribosomal subunit protein uL5z OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=1 SV=2
TrEMBL	A0A162ADS1	60S ribosomal protein L11 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013278 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	42.285107	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	41.086529	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	26.694424	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	28.255808	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	29.126692	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	34.949871	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	29.193924	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	21.802248	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	94.322517	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	105.115913	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	96.798317	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	131.130447	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	113.826408	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	122.689781	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	59.003723	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	99.304337	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	86.273109	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	60.65696	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	62.871616	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	101.368134	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	82.005005	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	115.727356	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	115.97406	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	125.648834	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	119.965446	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	69.626083	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	66.42202	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	72.250618	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	70.675217	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	98.212936		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	113.754738		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	122.766029		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	61.442719		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	122.952133		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	73.384949		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	89.202698		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	62.585403		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	73.54715		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	105.507843	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	44.315403	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	23.15514	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	127.426987	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	74.89283	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	120.737488	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	81.524765	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	198.965347	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	69.2323	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	187.830399	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	141.315842	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	127.502357	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19296, jg21322, jg23826, jg36765, jg7853
Aizoaceae	Mesembryanthemum crystallinum	1	gene_26007
Amaranthaceae	Atriplex hortensis	3	Ah011715, Ah035922, Ah035923
Amaranthaceae	Beta vulgaris	1	BVRB_9g209130
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10186, Sbi_jg11999, Sbi_jg26394, Sbi_jg46926
Amaranthaceae	Salicornia europaea	2	Seu_jg21214, Seu_jg22250
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00009557
Amaranthaceae	Suaeda glauca	4	Sgl54387, Sgl59719, Sgl80403, Sgl82864
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000018004, gene:ENSEOMG00000029355 ... gene:ENSEOMG00000032368, gene:ENSEOMG00000038104, gene:ENSEOMG00000053064
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.9AG0009700, CQ.Regalona.r1.9BG0012890
Anacardiaceae	Pistacia vera	1	pistato.v30072060
Apiaceae	Apium graveolens	3	Ag2G01661, Ag3G00530, Ag8G00963
Arecaceae	Cocos nucifera	3	COCNU_03G013930, COCNU_05G010030, scaffold021465G000040
Arecaceae	Phoenix dactylifera	3	gene-LOC103701994, gene-LOC103704876, gene-LOC103711522
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.1566.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G30229, Ftri15G06658, Ftri18G20368
Brassicaceae	Arabidopsis thaliana	4	AT2G42740.1, AT3G58700.1, AT4G18730.1, AT5G45775.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10001041m.g.v1.0, Thhalv10006260m.g.v1.0 ... Thhalv10026344m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g10690.v2.2, Sp5g04150.v2.2, Sp7g17430.v2.2
Brassicaceae	Brassica nigra	9	BniB02g062710.2N, BniB02g071770.2N, BniB04g011450.2N ... BniB04g016050.2N, BniB05g017640.2N, BniB06g054730.2N, BniB06g063320.2N, BniB07g023700.2N, BniB08g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G2890
Casuarinaceae	Casuarina glauca	1	Cgl02G3012
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g16400
Dunaliellaceae	Dunaliella salina	1	Dusal.0453s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g23180
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3431, nbisL1-mrna-7565, nbisL1-mrna-909
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1687, evm.TU.LG12.796
Plantaginaceae	Plantago ovata	2	Pov_00001769, Pov_00028336
Plumbaginaceae	Limonium bicolor	4	Lb1G00417, Lb2G11900, Lb4G24322, Lb4G24342
Poaceae	Echinochloa crus-galli	7	AH02.328, AH02.329, AH06.1960, BH02.356, BH06.1793, CH02.393 ... CH06.1987
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0107340, gene-QOZ80_2BG0160980 ... gene-QOZ80_5AG0401770, gene-QOZ80_5BG0450330, gene-QOZ80_6AG0542540, gene-QOZ80_6BG0495760
Poaceae	Lolium multiflorum	3	gene-QYE76_010406, gene-QYE76_017921, gene-QYE76_051042
Poaceae	Oryza coarctata	6	Oco01G004640, Oco02G004650, Oco04G006670, Oco09G004400 ... Oco10G004380, Oco11G010800
Poaceae	Oryza sativa	4	LOC_Os01g10820.1, LOC_Os02g14059.1, LOC_Os05g11710.1 ... LOC_Os06g35730.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G024100, gene-BS78_04G099200 ... gene-BS78_09G082500, gene-BS78_10G160900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0205165, Pt_Chr0206401, Pt_Chr0501510
Poaceae	Sporobolus alterniflorus	7	Chr02G028760, Chr05G006410, Chr10G016130, Chr11G006260 ... Chr12G025690, Chr18G004220, Chr22G013040
Poaceae	Thinopyrum elongatum	3	Tel1E01G124200, Tel1E01G228500, Tel3E01G230800
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG017970, gene_TRIDC1BG021990 ... gene_TRIDC3AG017690, gene_TRIDC3BG021910
Poaceae	Triticum aestivum	6	TraesCS1A02G125100.1, TraesCS1B02G144300.1 ... TraesCS1D02G128800.1, TraesCS3A02G136800.1, TraesCS3B02G154600.1, TraesCS3D02G137600.1
Poaceae	Zea mays	5	Zm00001eb120820_P001, Zm00001eb204910_P002 ... Zm00001eb238930_P002, Zm00001eb347380_P001, Zm00001eb384890_P001
Poaceae	Zoysia japonica	3	nbis-gene-10255, nbis-gene-19309, nbis-gene-24384
Poaceae	Zoysia macrostachya	3	Zma_g30681, Zma_g32919, Zma_g9596
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.376, evm.TU.LG02.2043, evm.TU.LG04.379 ... evm.TU.LG23.322
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g02650, gene.Posoc08g09920
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_12_RagTag.813, evm.TU.Scaffold_5_RagTag.1285 ... evm.TU.Scaffold_9_RagTag.1174
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11763, nbisL1-mrna-21000, nbisL1-mrna-24047
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16678
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11168, nbisL1-mrna-18676, nbisL1-mrna-7705
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.753, evm.TU.utg000027l.145
Rhizophoraceae	Kandelia obovata	3	Maker00006312, Maker00009943, Maker00013995
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1330, nbisL1-mrna-9790
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19981, nbisL1-mrna-4895
Salicaceae	Populus euphratica	7	populus_peu12208, populus_peu14366, populus_peu14367 ... populus_peu18012, populus_peu18013, populus_peu18029, populus_peu18030
Solanaceae	Lycium barbarum	5	gene-LOC132618097, gene-LOC132623030, gene-LOC132629901 ... gene-LOC132636578, gene-LOC132643541
Solanaceae	Solanum chilense	4	SOLCI000358800, SOLCI000416100, SOLCI003236600 ... SOLCI006038200
Solanaceae	Solanum pennellii	4	gene-LOC107002727, gene-LOC107007694, gene-LOC107010651 ... gene-LOC107026569
Tamaricaceae	Reaumuria soongarica	3	gene_13431, gene_5825, gene_9753
Tamaricaceae	Tamarix chinensis	2	TC01G1965, TC08G0419
Zosteraceae	Zostera marina	1	Zosma01g23310.v3.1