Basic Information
Locus ID:
Ag8G00916
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Replication protein A 70 kDa DNA-binding subunit B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 88321365 | 88324390 | + | Ag8G00916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 7,494.60 Da | 18.41 | 88.66 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 67 | 1.1E-6 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017256448.1 | PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YAY3 | Replication protein A subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_032054 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 35 | Ag10G00978, Ag10G02928, Ag11G04457, Ag11G04458, Ag11G04459 ... |