Basic Information
Locus ID:
Ag8G00910
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 86187751 | 86190171 | - | Ag8G00910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 77,332.87 Da | 34.08 | 95.98 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 25 | 262 | 1.43405E-84 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 352 | 555 | 1.5E-42 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 25 | 263 | 9.9E-61 | IPR001220 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 330 | 622 | 4.24E-71 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 25 | 262 | 2.43E-62 | IPR013320 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 313 | 427 | 2.1E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 428 | 638 | 5.4E-52 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 23 | 266 | 6.2E-62 | - |
| SMART | SM00220 | serkin_6 | 351 | 619 | 7.8E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 351 | 626 | 33.615612 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 473 | 485 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 357 | 379 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04960.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_017220764.1 | PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Daucus carota subsp. sativus] | 0 |
| Q9S9U1 | L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK71 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YM31 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028065 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.819964 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.793598 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.065852 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.915755 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.003082 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.86242 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.700474 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.852672 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.867856 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.332003 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.896843 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.860374 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.376171 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.973968 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.593739 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.043221 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.317788 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.323999 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.973064 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.607837 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.652649 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.890031 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.572569 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.856073 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.204069 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.717287 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.607874 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.766264 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.791041 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.599271 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.16767 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.700592 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.413719 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.718094 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.311914 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.361962 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.530532 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.663548 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.204306 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.096251 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.681889 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.25594 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.268131 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.973568 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.792433 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.605142 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.998196 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.395525 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.876551 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.345674 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20289, jg24884 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019880, pistato.v30072810 |
| Apiaceae | Apium graveolens | 1 | Ag8G00910 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720175 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G10401, FtriNA13643 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04960.1, AT4G28350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027026m.g.v1.0, Thhalv10028484m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03990.v2.2, Sp7g26300.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g011780.2N, BniB08g047280.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2262, Ceq02G2626 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2548, Cgl02G2719 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g03060, gene.Cymno12g03070 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07480 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005630 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g05560, gene.Posoc09g05580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.846 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23763 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1953 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21581 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.60 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20941 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21924 |
| Salicaceae | Populus euphratica | 4 | populus_peu10060, populus_peu18170, populus_peu18171 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622280, gene-LOC132638654 |
| Solanaceae | Solanum chilense | 1 | SOLCI003823000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009306 |